Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe01g0254 ATGAGTATGAAGATGCAGCAGCAGAGCCACCACTCAGTGGCTGTGAGGTTTAATGAGCAAATTGGGAGTAAAAAAGGGGTCACATTCATTCAAGCCAACAGGGCTTGGCTTCCTAAGTTTTTGTTGCTTTGGGTTCTGTTGGTGGCATTCATTAGTATGCTGATCTACAAGGGAATGGATGCTGACAACAAAGTTAGAAGAGAGGAAGTTTTGGGGAGCATGTGTGACCAAAGGGCAAGGATGCTTCAGGATCAATTCAGTGTCAGTGTCAACCATGTCCATGCTTTGGCTATTCTCATTTCCACTTTCCACTACTCCAAAAACGTATCGGCAATCGATCAGGAAACTTTTGCTGAGTACACGGCTAGAACTGCTTTCGAGCGGCCTTTGCTTAGCGGCGTGGCATTTGCGCAAAGAGTGGTGAACTCTGAGCGAGAGAAATTTGAAAAGCAACATGGGTGGACTATAAGAACAATGGAAAGGGAACCATCACCTATAAGGGATGAGTATGCGCCAGTCATATTTTCCCAGGAAACTGTTTCCTACATTGAATCTCTTGATATGATGTCTGGAGAGGAGGACCGTGAAAACATTTTGAGGTCGAGAGAAACAGGTAAAGCAGTTTTAACGAGCCCTTTCAGGCTACTGGGTTCTCATCATCTTGGAGTTGTGTTGACGATCCCTGTTTATAAAACCAAGCTTCCTGCAAATCCAACTATGGATGAGCGAACTCGAGCAACGGCAGGTTACCTGGGTGGAGCATTTGATGTGGAGTCACTTGTGGAGAATTTGCTTGGGCAACTTGCTGGAAATCAGGCCATTTTGGTGAATGTATACGATATCACGAACTATTCCGATCCCCTAGTAATGTATGGTCATCAATATGAAGATGCTGACATGTCTCTTTTGCATGAGAGCAAACTAGATTTTGGAGATCCATTTAGGAAGCATCAGATGATATGCAGATATCATCAGAAAGCACCTACATTATGGACGGCACTTACTACTGCATTCTTATTCTTTGTGATTGGATTGTTAGTGGGATATATCTTATACGGTGCAGCAACTCATATTGTTAAAGTTGAGGATGATTTCCATGAAATGCAAGAACTGAAAGTTCGAGCTGAAGCTGCTGATGTTGCAAAATCTCAGTTTCTCGCCACTGTCTCTCATGAAATCAGGACACCCATGAATGGCATCCTTGGAATGCTTGCTCTACTTCTTGATACTGAACTGAGTTCAACTCAAAGGGATTATGCTCAAACTGCTCAGGCCTGTGGAAAAGCACTGATAGCGTTAATAAATGAGGTGCTTGACCGGGCGAAAATTGAAGCTGGGAAGTTAGAGCTTGAAGCGGTTCCTTTTGACCTTAGATTGATACTAGATGATGTTCTGTCTTTGTTTTCTGAAAAGTCAAGGCACAAGGGAGTAGAGTTGGCAGTATTTGTTTCTGACAAAGTTCCTGAAATCGTTACGGGGGATCCCGGAAGGTTCAGACAAGTAATCACAAATCTTGTGGGTAATTCTGTGAAATTCACAGAACAAGGACATATATTCGTCAAAGTTCAATTAGCCGAACAATCAATGACCTCTACCAATATCAAATCTGAAACTCACATGAACGGAAACTTAGACGATGGTGCATCGTACAATAAACGTCAGTTTGAAACCTTAAGTGGATGTGAGGCAGCTGATAACCAAAACAGTTGGGACACTTTTAAGCATCTTATTGCAAATGAGGAATTCCCACTGAACGCTTCAAGCAATCTCACGGCTACAAACGAAAGTTCTGATATTGTTACTGTCATGATATCTGTTGAAGATACAGGAATCGGGATTCCGTTATGCGCCCAACGTCGAGTTTTTATGCCCTTCATGCAAGCAGATAGCTCAACCTCCAGAAACTATGGGGGAACTGGTATTGGCCTAAGCATCAGTAAGTGTTTGGTTGAACTAATGGGCGGCCAGATAAACTTTGTAAGCCGGCCTCAGGTTGGAAGCACATTCTCATTCACTGCTGTTTTTGGGAAATGCGAGAAGAAAGCGACAGTCGACATTAAAAAGTCTAATTTGGAGGAACTCCCTTCTGCATTTAGAGGATTGAAAGCTGTTGTAGTCGACGGGAAACCAGTTAGAGCTGCTGTGACCAAATACCATTTGAAGAGACTTGGAATCCTGGTTGAAGTTGCCAGTAGTGTCAAGATGTCTGCAGCTTTATGGGGAAAAAATGGATCTGTTAGATCAAGTAATATATTTCAGCCCGACGTAATTCTTCTCGAGAAAGATTTCTTTATTTCAAATAAGGAATGTGGTTCTTCTAATCTGCTTCATCAACTAGACTGGAAGCAGAATGGTCAGACCATTAAGTTGCCGAAATTGATCCTTCTTGCGACCAGCATGAGCACGGCGGAATTTGATAAAGCGAAGGAAGCGGGTTTTTCTGACACCTTGATCATGAAACCACTGAGAGCAAGCATGATAGGTGCATGTCTTCAACAGGTGCTCGGCTCGGGAAAGAAACGGCAGCTTGGGAAGGACATGGCTAATGGCTCCAACTTTCTTAGAGGGCTGCTCTGTGGCAAGAAGATATTGGTCGTTGATGACAATAGGGTAAACCGAAGAGTTGCTGCAGGTGCTTTGAAGAAATTCGGTGCCGATGTAGAGTGTGTCGAGAGCGGGAAAGCTGCACTGGCATTGCTTGAACTGCCACACAGTTTTGATGCTTGCTTTATGGATATTCAGATGCCAGAAATGGATGGATTCGAAGCGACCCGAAGAATCAGGCATATGGAGAGCATCGAAAATGAGGTACTGATTAGAGAATCAGGTGGCAAAGAAAATGCTAGGAAAGACGAGTGGCATGTTCCAATATTAGCCATGACCGCAGACGTAATTCACGCAACGTATGACGAGTGCTTGAAATGTGGGATGGATGGATACGTATCGAAGCCATTCGAGGAAGAGAATCTTTACGAGGCAGTTTCCACGTTTTTCAAATCAAAGCCCATCACGGATTCATGA 3021 43.56 MSMKMQQQSHHSVAVRFNEQIGSKKGVTFIQANRAWLPKFLLLWVLLVAFISMLIYKGMDADNKVRREEVLGSMCDQRARMLQDQFSVSVNHVHALAILISTFHYSKNVSAIDQETFAEYTARTAFERPLLSGVAFAQRVVNSEREKFEKQHGWTIRTMEREPSPIRDEYAPVIFSQETVSYIESLDMMSGEEDRENILRSRETGKAVLTSPFRLLGSHHLGVVLTIPVYKTKLPANPTMDERTRATAGYLGGAFDVESLVENLLGQLAGNQAILVNVYDITNYSDPLVMYGHQYEDADMSLLHESKLDFGDPFRKHQMICRYHQKAPTLWTALTTAFLFFVIGLLVGYILYGAATHIVKVEDDFHEMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTELSSTQRDYAQTAQACGKALIALINEVLDRAKIEAGKLELEAVPFDLRLILDDVLSLFSEKSRHKGVELAVFVSDKVPEIVTGDPGRFRQVITNLVGNSVKFTEQGHIFVKVQLAEQSMTSTNIKSETHMNGNLDDGASYNKRQFETLSGCEAADNQNSWDTFKHLIANEEFPLNASSNLTATNESSDIVTVMISVEDTGIGIPLCAQRRVFMPFMQADSSTSRNYGGTGIGLSISKCLVELMGGQINFVSRPQVGSTFSFTAVFGKCEKKATVDIKKSNLEELPSAFRGLKAVVVDGKPVRAAVTKYHLKRLGILVEVASSVKMSAALWGKNGSVRSSNIFQPDVILLEKDFFISNKECGSSNLLHQLDWKQNGQTIKLPKLILLATSMSTAEFDKAKEAGFSDTLIMKPLRASMIGACLQQVLGSGKKRQLGKDMANGSNFLRGLLCGKKILVVDDNRVNRRVAAGALKKFGADVECVESGKAALALLELPHSFDACFMDIQMPEMDGFEATRRIRHMESIENEVLIRESGGKENARKDEWHVPILAMTADVIHATYDECLKCGMDGYVSKPFEEENLYEAVSTFFKSKPITDS 1006
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 38899143 38906086 - Hsped.01g02540.1 Hepe01g0254 559364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe01g0254 1006 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 600 672 IPR003594 -
Hepe01g0254 1006 CDD HisKA 381 442 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Hepe01g0254 1006 CDD REC_hyHK_CKI1_RcsC-like 863 994 - -
Hepe01g0254 1006 ProSiteProfiles Histidine kinase domain profile. 388 677 IPR005467 -
Hepe01g0254 1006 SUPERFAMILY CheY-like 698 836 IPR011006 -
Hepe01g0254 1006 Gene3D - 445 680 IPR036890 -
Hepe01g0254 1006 PRINTS Bacterial sensor protein C-terminal signature 637 655 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Hepe01g0254 1006 PRINTS Bacterial sensor protein C-terminal signature 602 616 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Hepe01g0254 1006 PRINTS Bacterial sensor protein C-terminal signature 661 674 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Hepe01g0254 1006 PRINTS Bacterial sensor protein C-terminal signature 620 630 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Hepe01g0254 1006 Coils Coil 431 451 - -
Hepe01g0254 1006 FunFam Histidine kinase 4 112 327 - -
Hepe01g0254 1006 SUPERFAMILY CheY-like 860 997 IPR011006 -
Hepe01g0254 1006 CDD HATPase_EvgS-ArcB-TorS-like 498 675 - -
Hepe01g0254 1006 ProSiteProfiles Response regulatory domain profile. 862 998 IPR001789 GO:0000160(InterPro)
Hepe01g0254 1006 Gene3D - 59 111 - -
Hepe01g0254 1006 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 367 447 IPR036097 GO:0000155(InterPro)|GO:0007165(InterPro)
Hepe01g0254 1006 SMART REC_2 861 994 IPR001789 GO:0000160(InterPro)
Hepe01g0254 1006 SMART HisKA_10 381 446 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Hepe01g0254 1006 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 435 672 IPR036890 -
Hepe01g0254 1006 PANTHER TWO-COMPONENT HISTIDINE KINASE 30 997 IPR050956 -
Hepe01g0254 1006 Gene3D - 857 1004 - -
Hepe01g0254 1006 ProSiteProfiles CHASE domain profile. 108 320 IPR006189 -
Hepe01g0254 1006 Pfam Response regulator receiver domain 863 994 IPR001789 GO:0000160(InterPro)
Hepe01g0254 1006 FunFam Histidine kinase 4 353 444 - -
Hepe01g0254 1006 ProSiteProfiles Response regulatory domain profile. 702 835 IPR001789 GO:0000160(InterPro)
Hepe01g0254 1006 SMART HKATPase_4 493 677 IPR003594 -
Hepe01g0254 1006 SMART CHASE_2 108 293 IPR006189 -
Hepe01g0254 1006 Gene3D CHASE domain 112 327 IPR042240 -
Hepe01g0254 1006 Pfam His Kinase A (phospho-acceptor) domain 381 446 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Hepe01g0254 1006 Gene3D - 354 444 - -
Hepe01g0254 1006 Pfam CHASE domain 111 291 IPR006189 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g0254 Hepe-Chr1:38899143 Hepe02g2600 Hepe-Chr2:73208730 0.0 dispersed
Hepe01g0254 Hepe-Chr1:38899143 Hepe03g1107 Hepe-Chr3:63614763 0.0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54759 PF02518 HATPase_c 1.20E-31 CL0025 Hepe TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe01g0254 K14489 - csv:101204531 1833.92