Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe01g0272 GTGGAGCTTGTGGATATGGGGACTTACACAGCCAAGGGTATGGCACCAACACGGTAGCGCTGAGCACGGCGCTGTTCAACAACGGCCTCAGCTGTGGAGCCTGCTACCACTACAACAAATTTGTTTTGACGAATGATCCCAAATGGTGCCTTCCCGGAACCATTACGGTCACTGCCACCAACTTCTGCCCCCCCAACTACACTCTGCCCAACGACAACGGTGGCTGGTGCAACCCTCCCCTCCAACACTTCGACTTGGCTGTGCCTGCCTTCCTCCAGATCGCTCAGTACTCCGCCGGGATCGTCCCCGTATCCTTTCGAAGGTTGTTTGAGGGTGGTATTGAGAATGTGACTGAAGTTGGAACTTTGATTGCGGATGTATGTTTGCGGTTTCCTCGTTCTTTCATGGAGCGTTGTTGCTTCATTCAGAGAGAGGGAAATATGTTGGCTCACGAGCTAGCGCGAATGACTTTGGGTCTTCAACAACGGTTGGTTTGGCTAGAGGAAATTCCTTCAGATCTTGAATCCTTTTATTTGAAGGATTTGATTGTGGTTTGA 557 50.81 GACGYGDLHSQGYGTNTVALSTALFNNGLSCGACYHYNKFVLTNDPKWCLPGTITVTATNFCPPNYTLPNDNGGWCNPPLQHFDLAVPAFLQIAQYSAGIVPVSFRRLFEGGIENVTEVGTLIADVCLRFPRSFMERCCFIQREGNMLAHELARMTLGLQQRLVWLEEIPSDLESFYLKDLIVV 184
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 40432980 40438335 - Hsped.01g02720.1 Hepe01g0272 559382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe01g0272 184 SUPERFAMILY Barwin-like endoglucanases 1 107 IPR036908 -
Hepe01g0272 184 PANTHER EXPANSIN-A15 1 107 IPR002963 GO:0009664(InterPro)
Hepe01g0272 184 CDD DPBB_EXPA_N 1 107 - -
Hepe01g0272 184 Pfam Lytic transglycolase 17 105 IPR009009 -
Hepe01g0272 184 PRINTS Expansin signature 12 26 IPR002963 GO:0009664(InterPro)
Hepe01g0272 184 PRINTS Expansin signature 42 53 IPR002963 GO:0009664(InterPro)
Hepe01g0272 184 PRINTS Expansin signature 73 90 IPR002963 GO:0009664(InterPro)
Hepe01g0272 184 PRINTS Expansin signature 90 103 IPR002963 GO:0009664(InterPro)
Hepe01g0272 184 PRINTS Expansin signature 54 64 IPR002963 GO:0009664(InterPro)
Hepe01g0272 184 Gene3D - 1 108 IPR036908 -
Hepe01g0272 184 SMART dpbb_1 17 105 IPR007112 -
Hepe01g0272 184 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 1 108 IPR007112 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g0272 Hepe-Chr1:40432980 Hepe01g0297 Hepe-Chr1:44162445 8.80e-132 dispersed
Hepe01g0270 Hepe-Chr1:40388890 Hepe01g0272 Hepe-Chr1:40432980 3.88e-51 proximal
Hepe01g0272 Hepe-Chr1:40432980 Hepe01g0330 Hepe-Chr1:48956851 2.07e-63 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe01g0272 - - - 0.0