Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe01g0283 ATGGCTTCTTACTCACTATTTTCCTCTCTCCTTTTTCATTTCTTATTCTTCTTCCTCCTTCACCTCTTTTTTCGGTCCGCCTTTGCTGATTACGGTGGATGGGAAGGCGGCCACGCCACCTTCTATGGCGGTAACGATGGATCTGGTACCTTGGGTGGAGCTTGTGGATATGGGGACTTATACAGCCAAGGGTATGGCACCAATACGGTGGCGCTGAGCACGGCGCTGTTCAACAAGGGCCTCAGCTGTGGAGCCTGCTACGAGATGATGTGTACCAATGATCCCAAATGGTGCCTTCCCGGAACCATTACGGTCACTGCCACCAACTTCTGCCCCCCCAACTACGCCCTGCCCAACGACAACGGTGGCTGGTGCAACCCTCCCCTCCAACACTTCGACTTGGCTGTGCCTGCCTTCCTCCAGATCGCTCAGTACTCCGCCGGGATCGTCCCTGTATCCTTTCGAAGGTAA 471 54.56 MASYSLFSSLLFHFLFFFLLHLFFRSAFADYGGWEGGHATFYGGNDGSGTLGGACGYGDLYSQGYGTNTVALSTALFNKGLSCGACYEMMCTNDPKWCLPGTITVTATNFCPPNYALPNDNGGWCNPPLQHFDLAVPAFLQIAQYSAGIVPVSFRR 156
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 42448559 42449758 - Hsped.01g02830.1 Hepe01g0283 559393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe01g0283 156 CDD DPBB_EXPA_N 33 156 - -
Hepe01g0283 156 PRINTS Expansin/Lol pI family signature 51 69 IPR007118 GO:0005576(InterPro)
Hepe01g0283 156 PRINTS Expansin/Lol pI family signature 73 91 IPR007118 GO:0005576(InterPro)
Hepe01g0283 156 PRINTS Expansin/Lol pI family signature 33 48 IPR007118 GO:0005576(InterPro)
Hepe01g0283 156 PRINTS Expansin/Lol pI family signature 147 156 IPR007118 GO:0005576(InterPro)
Hepe01g0283 156 SMART dpbb_1 69 154 IPR007112 -
Hepe01g0283 156 PRINTS Expansin signature 64 78 IPR002963 GO:0009664(InterPro)
Hepe01g0283 156 PRINTS Expansin signature 103 113 IPR002963 GO:0009664(InterPro)
Hepe01g0283 156 PRINTS Expansin signature 139 152 IPR002963 GO:0009664(InterPro)
Hepe01g0283 156 PRINTS Expansin signature 91 102 IPR002963 GO:0009664(InterPro)
Hepe01g0283 156 PRINTS Expansin signature 122 139 IPR002963 GO:0009664(InterPro)
Hepe01g0283 156 SUPERFAMILY Barwin-like endoglucanases 33 156 IPR036908 -
Hepe01g0283 156 Pfam Lytic transglycolase 69 154 IPR009009 -
Hepe01g0283 156 FunFam Expansin 24 156 - -
Hepe01g0283 156 Gene3D - 23 156 IPR036908 -
Hepe01g0283 156 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 52 156 IPR007112 -
Hepe01g0283 156 PANTHER EXPANSIN-A15 17 156 IPR002963 GO:0009664(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g0283 Hepe-Chr1:42448559 Hepe01g0331 Hepe-Chr1:49000859 9.36e-104 dispersed
Hepe01g0283 Hepe-Chr1:42448559 Hepe01g0284 Hepe-Chr1:42477125 9.59e-91 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe01g0283 - - - 0.0