Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe01g0284 ATGGCTTCTTACTCACTATTTTCCTCTCTCCTTTTTCCTTTCTTATTCTTCTTCCTCTTTCACCTCTCTTTTCGGTTCGCCTTTGCTGATTACGGTGGATGGGAAGGCGGCCACGCCACCTTCTATGGCGGTACCGTTGGATATGATACCATGGGTGGAGCTTGTGGATATGGGGACTTATACAGCCAAGGGTATGGCACCAACACGGTGGCGCTGAGCACGGTGCTGTTCAACAACGGCCTCAGCTGTGGAGCCTGCTACGAGATGATGTGTACCAATGATCCCAAATGGTGCCTTCCCGGAACCATTACGGTCACTGCCACCAACTTCTGCCCCCCCAACGACAACGGTGGCTGGTGCAACCCTCCCCTCAAACACTTCAACTTGGCTGTGCCTGCCTTCCTCCAAATCGCTCAGTACTCCGCCGGGATCGTCCCCGTATCCTTTCGAAGAGTCCCATGCATGAAGAAAGGGGGAGTGAGGTTCACAATCAACGGCCACTCCTACTTCAACTTAGTCTTAATCACCAACGTGGGCGGTGCCGGGGACGTTCACTCGGTGTCGATAAAGGGCGCTCGAACCGGATGGCAGGCGATGTCCCGAAATTGGGGCCAAAACTGGCAGAGCAACAACTATCTCAATGGCCAAGGCTTATCCTTTCAAGTCACTCTTAGCGATGGTCGAACTCTCACTGCCTATAATCTTGCTCCTTCCAATTGGCAGTTTGGCCAAACCTATGAAGGCCCCCAATTCTAA 756 52.78 MASYSLFSSLLFPFLFFFLFHLSFRFAFADYGGWEGGHATFYGGTVGYDTMGGACGYGDLYSQGYGTNTVALSTVLFNNGLSCGACYEMMCTNDPKWCLPGTITVTATNFCPPNDNGGWCNPPLKHFNLAVPAFLQIAQYSAGIVPVSFRRVPCMKKGGVRFTINGHSYFNLVLITNVGGAGDVHSVSIKGARTGWQAMSRNWGQNWQSNNYLNGQGLSFQVTLSDGRTLTAYNLAPSNWQFGQTYEGPQF 251
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 42477125 42481334 - Hsped.01g02840.1 Hepe01g0284 559394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe01g0284 251 SUPERFAMILY Barwin-like endoglucanases 33 177 IPR036908 -
Hepe01g0284 251 Pfam Expansin C-terminal domain 160 237 IPR007117 -
Hepe01g0284 251 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 169 248 IPR007117 -
Hepe01g0284 251 Gene3D - 159 251 IPR036749 -
Hepe01g0284 251 PRINTS Expansin/Lol pI family signature 51 69 IPR007118 GO:0005576(InterPro)
Hepe01g0284 251 PRINTS Expansin/Lol pI family signature 234 248 IPR007118 GO:0005576(InterPro)
Hepe01g0284 251 PRINTS Expansin/Lol pI family signature 196 210 IPR007118 GO:0005576(InterPro)
Hepe01g0284 251 PRINTS Expansin/Lol pI family signature 73 91 IPR007118 GO:0005576(InterPro)
Hepe01g0284 251 PRINTS Expansin/Lol pI family signature 142 158 IPR007118 GO:0005576(InterPro)
Hepe01g0284 251 PRINTS Expansin/Lol pI family signature 33 48 IPR007118 GO:0005576(InterPro)
Hepe01g0284 251 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 52 159 IPR007112 -
Hepe01g0284 251 Pfam Lytic transglycolase 70 149 IPR009009 -
Hepe01g0284 251 Gene3D - 23 155 IPR036908 -
Hepe01g0284 251 PRINTS Expansin signature 134 147 IPR002963 GO:0009664(InterPro)
Hepe01g0284 251 PRINTS Expansin signature 158 170 IPR002963 GO:0009664(InterPro)
Hepe01g0284 251 PRINTS Expansin signature 64 78 IPR002963 GO:0009664(InterPro)
Hepe01g0284 251 PRINTS Expansin signature 103 113 IPR002963 GO:0009664(InterPro)
Hepe01g0284 251 PRINTS Expansin signature 91 102 IPR002963 GO:0009664(InterPro)
Hepe01g0284 251 PRINTS Expansin signature 117 134 IPR002963 GO:0009664(InterPro)
Hepe01g0284 251 PRINTS Expansin signature 170 191 IPR002963 GO:0009664(InterPro)
Hepe01g0284 251 PRINTS Expansin signature 234 250 IPR002963 GO:0009664(InterPro)
Hepe01g0284 251 PRINTS Expansin signature 205 226 IPR002963 GO:0009664(InterPro)
Hepe01g0284 251 SMART dpbb_1 69 149 IPR007112 -
Hepe01g0284 251 FunFam Expansin 159 251 - -
Hepe01g0284 251 CDD DPBB_EXPA_N 33 154 - -
Hepe01g0284 251 PANTHER EXPANSIN-A15 19 251 IPR002963 GO:0009664(InterPro)
Hepe01g0284 251 SUPERFAMILY PHL pollen allergen 156 248 IPR036749 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g0284 Hepe-Chr1:42477125 Hepe01g0330 Hepe-Chr1:48956851 5.84e-177 dispersed
Hepe01g0283 Hepe-Chr1:42448559 Hepe01g0284 Hepe-Chr1:42477125 9.59e-91 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe01g0284 - - - 0.0