Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe01g0295 ATGGCTTCTTACTCACTATTTTCCTCTCTCCTTTTTCCATTTTTATTCTTCTTCCTCTTTCACCTCTCTTTTCGGTCCGCCTTTGCTGATTACGGTGGATGGGAAGGCGGCCACGCCACCTTCTATGGCGGTCCCGAGGGAGTTGGTACCATGGGTGGAGCTTGTGGATATGGGGACTTACACAGCCAAGGGTATGGCACCAACACGGTGGCGCTGAGCACGACGCTGTTCAACAACGGCCTCAGCTGTGGAGCCTGCTACGAGATGATGTGTACCAATGATCCCAAATGGTGCCTTCCCGGAACCATTACGGTCACTGCCACCAACTTGTGCCCCCCCAACTACACTCTTCCCAACGACAACGGTGGCTGGTGCAACCCTCCCCTCCAACACTTCGACTTGGCTGTGCCTGCCTTCCTCCAGATCGCTCAGTACTCCGCCGGGATCGTCCCCGTATCCTTTCGAAGAGTCCCATGCATGAAGAAAGGGGGAGTGAGGTTCACAATCAACGGCAACTCCTACTTCAACTTAGTCTTAATCACCAACGTGGGCGGTGCCGGGGACGTTCACTCGGTGTCGATAAAGGGCGCTCGAACCGGATGGCAGGCGATGTCCCGAAATTGGGGCCAAAACTGGCAGAGCAACAACTATCTCAATGGCCAAGGCTTATCCTTTCAAGTCACTCTTAGCGATGGTCGAACTCTCACTGCCTATAATCTTGCCCCTTCCAATTGGCAGTTTGGCCAAACCTATGAAGGCCCCCAATTCTAA 771 53.7 MASYSLFSSLLFPFLFFFLFHLSFRSAFADYGGWEGGHATFYGGPEGVGTMGGACGYGDLHSQGYGTNTVALSTTLFNNGLSCGACYEMMCTNDPKWCLPGTITVTATNLCPPNYTLPNDNGGWCNPPLQHFDLAVPAFLQIAQYSAGIVPVSFRRVPCMKKGGVRFTINGNSYFNLVLITNVGGAGDVHSVSIKGARTGWQAMSRNWGQNWQSNNYLNGQGLSFQVTLSDGRTLTAYNLAPSNWQFGQTYEGPQF 256
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 44093800 44097600 - Hsped.01g02950.1 Hepe01g0295 559405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe01g0295 256 PRINTS Expansin signature 103 113 IPR002963 GO:0009664(InterPro)
Hepe01g0295 256 PRINTS Expansin signature 91 102 IPR002963 GO:0009664(InterPro)
Hepe01g0295 256 PRINTS Expansin signature 139 152 IPR002963 GO:0009664(InterPro)
Hepe01g0295 256 PRINTS Expansin signature 239 255 IPR002963 GO:0009664(InterPro)
Hepe01g0295 256 PRINTS Expansin signature 163 175 IPR002963 GO:0009664(InterPro)
Hepe01g0295 256 PRINTS Expansin signature 175 196 IPR002963 GO:0009664(InterPro)
Hepe01g0295 256 PRINTS Expansin signature 64 78 IPR002963 GO:0009664(InterPro)
Hepe01g0295 256 PRINTS Expansin signature 122 139 IPR002963 GO:0009664(InterPro)
Hepe01g0295 256 PRINTS Expansin signature 210 231 IPR002963 GO:0009664(InterPro)
Hepe01g0295 256 Gene3D - 21 160 IPR036908 -
Hepe01g0295 256 SMART dpbb_1 69 154 IPR007112 -
Hepe01g0295 256 FunFam Expansin 24 160 - -
Hepe01g0295 256 FunFam Expansin 164 256 - -
Hepe01g0295 256 SUPERFAMILY Barwin-like endoglucanases 33 182 IPR036908 -
Hepe01g0295 256 CDD DPBB_EXPA_N 33 159 - -
Hepe01g0295 256 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 52 164 IPR007112 -
Hepe01g0295 256 PANTHER EXPANSIN-A15 19 256 IPR002963 GO:0009664(InterPro)
Hepe01g0295 256 SUPERFAMILY PHL pollen allergen 161 253 IPR036749 -
Hepe01g0295 256 Gene3D - 164 256 IPR036749 -
Hepe01g0295 256 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 174 253 IPR007117 -
Hepe01g0295 256 Pfam Lytic transglycolase 69 154 IPR009009 -
Hepe01g0295 256 Pfam Expansin C-terminal domain 165 242 IPR007117 -
Hepe01g0295 256 PRINTS Expansin/Lol pI family signature 147 163 IPR007118 GO:0005576(InterPro)
Hepe01g0295 256 PRINTS Expansin/Lol pI family signature 239 253 IPR007118 GO:0005576(InterPro)
Hepe01g0295 256 PRINTS Expansin/Lol pI family signature 201 215 IPR007118 GO:0005576(InterPro)
Hepe01g0295 256 PRINTS Expansin/Lol pI family signature 33 48 IPR007118 GO:0005576(InterPro)
Hepe01g0295 256 PRINTS Expansin/Lol pI family signature 51 69 IPR007118 GO:0005576(InterPro)
Hepe01g0295 256 PRINTS Expansin/Lol pI family signature 73 91 IPR007118 GO:0005576(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g0295 Hepe-Chr1:44093800 Hepe01g0331 Hepe-Chr1:49000859 1.83e-187 dispersed
Hepe01g0295 Hepe-Chr1:44093800 Hepe01g0297 Hepe-Chr1:44162445 2.22e-109 proximal
Hepe01g0295 Hepe-Chr1:44093800 Hepe01g0299 Hepe-Chr1:44207017 4.53e-71 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe01g0295 - - - 0.0