Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe01g0297 ATGGCTTCTTACTCACTATTTTCCTCTCTCCTTTTTCCTTTTTTATTCTTCTTCCTCTTTCACCTCTCTTTTCGGTCCGCCTTTGCTGATTACGGTGGATGGGAAGGCGGCCACGCCACCTTCTATGGCGGTCCCGATGGAGATGGTACCATGGGTGGAGCTTGTGGATATGGGGACTTACACAGCCAAGGGTATGGCACCAACACGGTGGCGCTGAGCACGACGCTGTTCAACAACGGCCTCAGCTGTGGAGCCTGCTACGAGATGATGTGTACCAATGATCCCAAATGGTGCCTTCCCGGAACCATTACGGTCACTGCCACCAACTTGTGCCCCCCCAACTACACACTTCCCAACGACAACGGTGGCTGGTGCAACCCTCCCCTCCAACACTTCGACTTGGCTGTGCCTGCCTTCCTCCAGATCGCTCAGTACTCCGCCGGGATCGTCCCCGTATCCTTTCGAAGGTTGTTTGAGGGTGGTATTGAGAATGTGACTGAAGTTGGAACTTTGATTGCGGATGTATGTTTGCGGTTTCCTCGTTCTTTCATGGAGCGTTGTTGCTTCATTCAGAGAGAGGGAAATATGTTGGCTCACGAGCTAGCGCGAATGACTTTGGGTCTTCAACAACGGTTGGTTTGGCTAGAGGAAATTCCTTCAGATCTTGAATCCTTTTATTTGAAGGATTTGATTGTGGTTTGA 702 50.85 MASYSLFSSLLFPFLFFFLFHLSFRSAFADYGGWEGGHATFYGGPDGDGTMGGACGYGDLHSQGYGTNTVALSTTLFNNGLSCGACYEMMCTNDPKWCLPGTITVTATNLCPPNYTLPNDNGGWCNPPLQHFDLAVPAFLQIAQYSAGIVPVSFRRLFEGGIENVTEVGTLIADVCLRFPRSFMERCCFIQREGNMLAHELARMTLGLQQRLVWLEEIPSDLESFYLKDLIVV 233
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 44162445 44165778 - Hsped.01g02970.1 Hepe01g0297 559407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe01g0297 233 CDD DPBB_EXPA_N 33 156 - -
Hepe01g0297 233 PRINTS Expansin signature 122 139 IPR002963 GO:0009664(InterPro)
Hepe01g0297 233 PRINTS Expansin signature 139 152 IPR002963 GO:0009664(InterPro)
Hepe01g0297 233 PRINTS Expansin signature 91 102 IPR002963 GO:0009664(InterPro)
Hepe01g0297 233 PRINTS Expansin signature 103 113 IPR002963 GO:0009664(InterPro)
Hepe01g0297 233 PRINTS Expansin signature 64 78 IPR002963 GO:0009664(InterPro)
Hepe01g0297 233 Pfam Lytic transglycolase 69 154 IPR009009 -
Hepe01g0297 233 PANTHER EXPANSIN-A15 19 156 IPR002963 GO:0009664(InterPro)
Hepe01g0297 233 SMART dpbb_1 69 154 IPR007112 -
Hepe01g0297 233 SUPERFAMILY Barwin-like endoglucanases 33 156 IPR036908 -
Hepe01g0297 233 PRINTS Expansin/Lol pI family signature 33 48 IPR007118 GO:0005576(InterPro)
Hepe01g0297 233 PRINTS Expansin/Lol pI family signature 73 91 IPR007118 GO:0005576(InterPro)
Hepe01g0297 233 PRINTS Expansin/Lol pI family signature 147 163 IPR007118 GO:0005576(InterPro)
Hepe01g0297 233 PRINTS Expansin/Lol pI family signature 51 69 IPR007118 GO:0005576(InterPro)
Hepe01g0297 233 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 52 157 IPR007112 -
Hepe01g0297 233 FunFam Expansin 24 159 - -
Hepe01g0297 233 Gene3D - 21 157 IPR036908 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g0272 Hepe-Chr1:40432980 Hepe01g0297 Hepe-Chr1:44162445 8.80e-132 dispersed
Hepe01g0297 Hepe-Chr1:44162445 Hepe01g0331 Hepe-Chr1:49000859 4.06e-109 dispersed
Hepe08g0533 Hepe-Chr8:4667513 Hepe01g0297 Hepe-Chr1:44162445 3.98e-18 dispersed
Hepe01g0294 Hepe-Chr1:44090585 Hepe01g0297 Hepe-Chr1:44162445 1.66e-50 proximal
Hepe01g0295 Hepe-Chr1:44093800 Hepe01g0297 Hepe-Chr1:44162445 2.22e-109 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe01g0297 - - - 0.0