Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Hepe01g0302 | ATGTTCACCACTACTGCTGAACGGGAAATTGTCCGTGACATGAAGGAGAAGCTAGCATATGTTGCTCTTGACTACGAACAAGAACTCGAGACTGCAAAGAGCAGTTCCTCAATTGAGAAGAACTACGAACTTCCTGATGGACAAGTCATCACCATTGGAGCTGAGAGATTCCGTTGCCCTGAAGTTCTATTCCAGCCATCTCTCATCGGTATGAAAGCTGCAGGAATTCACGAAACTACCTACAACTCCATCATGAAGTGTGATGTCGATATCAGAAAGGACCTTTACGGAAACATCGTCCTCAGTGGTGGTTCAACCATGTTCCCTGGCATTGCAGATAGGATGAGCAAGGAAATCACTGCCCTCGCTCCCAGCAGCATGAAGATTAAGGTTGTTGCACCACCAGAAAGGAAATACAGTGTCTGGATTGGAGGGTCTATTCTTGCATCTCTAAGTACCTTCCAGCAGATGTGGATTTCGAAGGGTGAATATGACGAATCCGGCCCATCCATTGTCCACAGGAAGTGCTTCTAA | 534 | 46.44 | MFTTTAEREIVRDMKEKLAYVALDYEQELETAKSSSSIEKNYELPDGQVITIGAERFRCPEVLFQPSLIGMKAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF | 177 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 45277193 | 45277726 | - | Hsped.01g03020.1 | Hepe01g0302 | 559412 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Hepe01g0302 | 177 | FunFam | Putative actin-related protein 5 | 141 | 169 | - | - | |
| Hepe01g0302 | 177 | Gene3D | Actin; Chain A, domain 4 | 2 | 73 | - | - | |
| Hepe01g0302 | 177 | FunFam | Major actin | 59 | 140 | - | - | |
| Hepe01g0302 | 177 | PANTHER | ACTIN | 5 | 169 | IPR004000 | - | |
| Hepe01g0302 | 177 | ProSitePatterns | Actins signature 2. | 158 | 166 | IPR004001 | - | |
| Hepe01g0302 | 177 | FunFam | Actin, alpha skeletal muscle | 1 | 73 | - | - | |
| Hepe01g0302 | 177 | SUPERFAMILY | Actin-like ATPase domain | 2 | 177 | IPR043129 | - | |
| Hepe01g0302 | 177 | Gene3D | - | 141 | 171 | - | - | |
| Hepe01g0302 | 177 | Gene3D | - | 74 | 140 | - | - | |
| Hepe01g0302 | 177 | SMART | actin_3 | 1 | 177 | IPR004000 | - | |
| Hepe01g0302 | 177 | Pfam | Actin | 2 | 177 | IPR004000 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Hepe01g0302 | Hepe-Chr1:45277193 | Hepe04g0054 | Hepe-Chr4:21657288 | 1.78e-72 | dispersed | |
| Hepe01g0800 | Hepe-Chr1:71842897 | Hepe01g0302 | Hepe-Chr1:45277193 | 2.94e-97 | transposed | |
| Hepe02g0785 | Hepe-Chr2:8847651 | Hepe01g0302 | Hepe-Chr1:45277193 | 8.20e-117 | transposed | |
| Hepe03g1751 | Hepe-Chr3:74402531 | Hepe01g0302 | Hepe-Chr1:45277193 | 4.86e-32 | transposed | |
| Hepe04g0855 | Hepe-Chr4:62818130 | Hepe01g0302 | Hepe-Chr1:45277193 | 1.65e-116 | transposed | |
| Hepe04g1131 | Hepe-Chr4:66368545 | Hepe01g0302 | Hepe-Chr1:45277193 | 9.82e-123 | transposed | |
| Hepe06g0523 | Hepe-Chr6:30255387 | Hepe01g0302 | Hepe-Chr1:45277193 | 1.56e-23 | transposed | |
| Hepe08g1258 | Hepe-Chr8:13509601 | Hepe01g0302 | Hepe-Chr1:45277193 | 2.80e-122 | transposed | |
| Hepe01g0302 | Hepe-Chr1:45277193 | Hepe09g1698 | Hepe-Chr9:51555315 | 1.18e-41 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Hepe01g0302 | K10355 | - | csv:101220617 | 352.443 |