Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe01g0330 ATGGCTTCTTACTCACTATTTTCCTCTCTCCTTTTTCTTTTCTTATTCTTCTTCCTCTTTCACCTCTCTTTTCGGTTCGCCTTTGCTGATTACGGTGGATGGGAAGGCGGCCACGCCTCCTTCTATGGCGGTACCGATGGATATGATACCATGGGTGGAGCTTGTGGATATGGGGACTTATACAGCCAAGGGTATGGCACCAACACGGTGGCGCTGAGCACGGCGCTGTTCAACAACGGCCTCAGCTGTGGAGCCTGCTACGAGATGATGTGTACCAATGATCCCAAATGGTGCCTTCCCGGAACCATTACGGTCACTGCCACCAACTTCTGCCCCCCCAACGACAACGGTGGCTGGTGCAACCCTCCCCTCAAACACTTCAACTTGGCTGTGCCTGCCTTCCTCCAAATCGCTCAGTACTCCGCCGGGATCGTCCCCGTATCCTTTCGAAGAGTCCCATGCATGAAGAAAGGGGGAGTGAGGTTCACAATCAACGGCAACTCCTACTTCAACTTAGTCTTAATCACCAACGTGGGCGGTGTCGGGGACGTTCACTCGGTGTCGATAAAGGGCGCTCGAACCGGATGGCAGGCGATGTCCCGAAATTGGGGCCAAAACTGGCAGAGCAACAACTATCTCAATGGCCAAGGCTTATCCTTTCAAGTCACTCTTAGCGATGGTCGAACTCTCACTGCCTATAATCTTGCCCCTTCCAATTGGCAGTTTGGCCAAACCTATGAAGGCCCCCAATTCTAA 756 52.65 MASYSLFSSLLFLFLFFFLFHLSFRFAFADYGGWEGGHASFYGGTDGYDTMGGACGYGDLYSQGYGTNTVALSTALFNNGLSCGACYEMMCTNDPKWCLPGTITVTATNFCPPNDNGGWCNPPLKHFNLAVPAFLQIAQYSAGIVPVSFRRVPCMKKGGVRFTINGNSYFNLVLITNVGGVGDVHSVSIKGARTGWQAMSRNWGQNWQSNNYLNGQGLSFQVTLSDGRTLTAYNLAPSNWQFGQTYEGPQF 251
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 48956851 48961102 + Hsped.01g03300.1 Hepe01g0330 559440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe01g0330 251 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 169 248 IPR007117 -
Hepe01g0330 251 SUPERFAMILY Barwin-like endoglucanases 15 177 IPR036908 -
Hepe01g0330 251 PRINTS Expansin signature 134 147 IPR002963 GO:0009664(InterPro)
Hepe01g0330 251 PRINTS Expansin signature 158 170 IPR002963 GO:0009664(InterPro)
Hepe01g0330 251 PRINTS Expansin signature 103 113 IPR002963 GO:0009664(InterPro)
Hepe01g0330 251 PRINTS Expansin signature 91 102 IPR002963 GO:0009664(InterPro)
Hepe01g0330 251 PRINTS Expansin signature 117 134 IPR002963 GO:0009664(InterPro)
Hepe01g0330 251 PRINTS Expansin signature 234 250 IPR002963 GO:0009664(InterPro)
Hepe01g0330 251 PRINTS Expansin signature 64 78 IPR002963 GO:0009664(InterPro)
Hepe01g0330 251 PRINTS Expansin signature 205 226 IPR002963 GO:0009664(InterPro)
Hepe01g0330 251 PRINTS Expansin signature 170 191 IPR002963 GO:0009664(InterPro)
Hepe01g0330 251 Gene3D - 159 251 IPR036749 -
Hepe01g0330 251 Pfam Expansin C-terminal domain 160 237 IPR007117 -
Hepe01g0330 251 PANTHER EXPANSIN-A15 14 251 IPR002963 GO:0009664(InterPro)
Hepe01g0330 251 Pfam Lytic transglycolase 69 149 IPR009009 -
Hepe01g0330 251 CDD DPBB_EXPA_N 33 154 - -
Hepe01g0330 251 PRINTS Expansin/Lol pI family signature 51 69 IPR007118 GO:0005576(InterPro)
Hepe01g0330 251 PRINTS Expansin/Lol pI family signature 234 248 IPR007118 GO:0005576(InterPro)
Hepe01g0330 251 PRINTS Expansin/Lol pI family signature 196 210 IPR007118 GO:0005576(InterPro)
Hepe01g0330 251 PRINTS Expansin/Lol pI family signature 142 158 IPR007118 GO:0005576(InterPro)
Hepe01g0330 251 PRINTS Expansin/Lol pI family signature 33 48 IPR007118 GO:0005576(InterPro)
Hepe01g0330 251 PRINTS Expansin/Lol pI family signature 73 91 IPR007118 GO:0005576(InterPro)
Hepe01g0330 251 FunFam Expansin 159 251 - -
Hepe01g0330 251 SUPERFAMILY PHL pollen allergen 156 248 IPR036749 -
Hepe01g0330 251 SMART dpbb_1 69 149 IPR007112 -
Hepe01g0330 251 Gene3D - 23 155 IPR036908 -
Hepe01g0330 251 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 52 159 IPR007112 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g0284 Hepe-Chr1:42477125 Hepe01g0330 Hepe-Chr1:48956851 5.84e-177 dispersed
Hepe01g0299 Hepe-Chr1:44207017 Hepe01g0330 Hepe-Chr1:48956851 2.84e-70 dispersed
Hepe01g0330 Hepe-Chr1:48956851 Hepe02g3279 Hepe-Chr2:82407301 1.66e-139 dispersed
Hepe01g0330 Hepe-Chr1:48956851 Hepe01g0331 Hepe-Chr1:49000859 1.25e-170 tandem
Hepe01g0272 Hepe-Chr1:40432980 Hepe01g0330 Hepe-Chr1:48956851 2.07e-63 wgd
Hepe01g0330 Hepe-Chr1:48956851 Hepe10g1240 Hepe-Chr10:47669621 2.38e-118 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe01g0330 - - - 0.0