Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe01g0395 ATGGCTTCCTCTTCACCTCCACTCTCATCCAAAACCAGAAGAACCCTAATCGACATCTTCCAGCCATCGCTTTCCAAACGCTTAAAATCCTCACAGACATCGAAAACCCTAGCAACCCCGGACAAGAAATGCGATTCAGACCTCACATTGCCTTCCTCTTCCTCCGACATCTCTGCCGCTGAGAAATCCCGCATCGAAACCAACAAATGGATGGCCAGATCCAAGCGCAATCTCAAAATTTGCTCCGATAGGGTTTCCAAATGGGAGAATGGATGCGTCAAATTGGAGGAGCTTTTGGTGGATGAGACATGGTTCGAAGCCCTTCCCGGAGAGTTTGAGAAGCCCTATGCTCTTAATCTCTGCAAATTTGTAGAGACGGAGATTTGTAGCAGTGGTTTCCCTATTTATCCTCCTCCCAGTTTGATCTTTAATGCTCTGAATTCTACCCCTTTTGATAGGGTGAAAGTTGTTATTCTTGGTCAGGATCCTTATCATGGGCCTGGTCAAGCTATGGGTCTTTCGTTTTCTGTTCCTGAGGGAGTTAAAATCCCATCTAGTCTTCTCAACATTTTCAAGGAACTTAGGGAAGATCTTGGTTGTTCTATTCCATCCCATGGAAATCTCGAGAAATGGGCTGTTCAGGGAGTCTTGTTGCTTAATGCTGCTCTCACAGTTAGAAAGCATCAAGCCAACTCTCATGCTAAAAAAGGATGGGAACAATTCACTGATGCTGTCATCAAGACAATATCACAAAAGAAGGAAGGGGTTGTTTTTCTCCTTTGGGGGAACTTTGCTCAAGCGAAATTGAGGTTAATTGATGAAAAGAAGCATCACATTCTCAAAGCAGCGCATCCATCTGGTTTGTCTGCTAACAGAGGCTTCTTTGGCTGCAGGCATTTTTCTCGAACAAACGTGCTTCTGAAGGAACTAGGTACTGCCTCTATAGACTGGCAACTTTGA 960 44.69 MASSSPPLSSKTRRTLIDIFQPSLSKRLKSSQTSKTLATPDKKCDSDLTLPSSSSDISAAEKSRIETNKWMARSKRNLKICSDRVSKWENGCVKLEELLVDETWFEALPGEFEKPYALNLCKFVETEICSSGFPIYPPPSLIFNALNSTPFDRVKVVILGQDPYHGPGQAMGLSFSVPEGVKIPSSLLNIFKELREDLGCSIPSHGNLEKWAVQGVLLLNAALTVRKHQANSHAKKGWEQFTDAVIKTISQKKEGVVFLLWGNFAQAKLRLIDEKKHHILKAAHPSGLSANRGFFGCRHFSRTNVLLKELGTASIDWQL 319
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 55232084 55239431 + Hsped.01g03950.1 Hepe01g0395 559505

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe01g0395 319 FunFam Uracil-DNA glycosylase 94 319 - -
Hepe01g0395 319 SUPERFAMILY Uracil-DNA glycosylase-like 99 319 IPR036895 -
Hepe01g0395 319 CDD UDG-F1-like 116 317 IPR002043 GO:0004844(InterPro)|GO:0006281(InterPro)|GO:0006284(InterPro)
Hepe01g0395 319 PANTHER URACIL-DNA GLYCOSYLASE 25 319 IPR002043 GO:0004844(InterPro)|GO:0004844(PANTHER)|GO:0005634(PANTHER)|GO:0005739(PANTHER)|GO:0006281(InterPro)|GO:0006284(InterPro)|GO:0097510(PANTHER)
Hepe01g0395 319 ProSitePatterns Uracil-DNA glycosylase signature. 155 164 IPR018085 GO:0006281(InterPro)|GO:0016799(InterPro)
Hepe01g0395 319 Gene3D - 81 319 IPR036895 -
Hepe01g0395 319 SMART UDG_2 147 307 IPR005122 -
Hepe01g0395 319 SMART UDG_2_a 147 307 - -
Hepe01g0395 319 Pfam Uracil DNA glycosylase superfamily 153 305 IPR005122 -
Hepe01g0395 319 Hamap Uracil-DNA glycosylase [ung]. 101 318 IPR002043 GO:0004844(InterPro)|GO:0006281(InterPro)|GO:0006284(InterPro)
Hepe01g0395 319 NCBIfam uracil-DNA glycosylase 102 309 IPR002043 GO:0004844(InterPro)|GO:0006281(InterPro)|GO:0006284(InterPro)
Hepe01g0395 319 MobiDBLite consensus disorder prediction 31 55 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe01g0395 K03648 - - csv:101207581 572.778
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1042 . . . . . . . . . . . . . . Sed04g3062 . . Bhi07g00120 Tan04g1675 Cmetu10g0133 Lac13g1644 Hepe01g0395 . . . . . . . . . . . . . . . Chy10g00117 Cme10g01102 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g01019 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011117 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 31