Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe01g0469 ATGGCAGTTCTACCAACCACCTCCTCAAGATTGGATCTCACCATCTCTGTACCTGGCTTCAATTCATTCTCCTCACCACTTCCTCCATCTGTAGTGAGAGATTTGGACATGAATCGAGCTCCCGACGAAGAGGAATGGATGATGGGAAGTATGGAGGAAGATGAAGAAAATACCAATGGAAACCATCCAAGGAAGAAGCTGCGTTTGACAAAGGAACAGTCTCATCTTCTTGAACAAAGCTTCAGACAAAACCATACCTTAAATCCAAAACAAAAAGAGAATTTGGCAGAAGTGTTGAAGTTGAAGCCAAGGCAGGTTGAGGTTTGGTTTCAGAATCGAAGGGCAAGGAGCAAGCTAAAGCAAACGGAGATGGAGTGCGAGTATCTAAAGAGATGGTTCGGGCTATTGACAGAGCAAAACAAGAGACTGCAAAAGGAGGTGGAGGAGCTGAGGGCGATGAAGGTGGCGCCGCCGACGGTGATATCACCGCACAGCTGCGAGCCACTGCCTGCCTCTAACCTAACAATGTGCCCACGCTGCGAGCGCGTGACCACCACCACCCTCGACAAGACCCGCATTGTCGTTTAA 588 48.81 MAVLPTTSSRLDLTISVPGFNSFSSPLPPSVVRDLDMNRAPDEEEWMMGSMEEDEENTNGNHPRKKLRLTKEQSHLLEQSFRQNHTLNPKQKENLAEVLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGLLTEQNKRLQKEVEELRAMKVAPPTVISPHSCEPLPASNLTMCPRCERVTTTTLDKTRIVV 195
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 61314157 61320731 - Hsped.01g04690.1 Hepe01g0469 559579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe01g0469 195 ProSitePatterns 'Homeobox' domain signature. 95 118 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Hepe01g0469 195 CDD homeodomain 63 121 IPR001356 GO:0003677(InterPro)
Hepe01g0469 195 SUPERFAMILY Homeodomain-like 50 121 IPR009057 -
Hepe01g0469 195 Coils Coil 133 153 - -
Hepe01g0469 195 Gene3D - 56 127 - -
Hepe01g0469 195 ProSiteProfiles 'Homeobox' domain profile. 60 120 IPR001356 GO:0003677(InterPro)
Hepe01g0469 195 SMART HOX_1 62 124 IPR001356 GO:0003677(InterPro)
Hepe01g0469 195 SMART halz 120 163 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe01g0469 195 Pfam Homeobox associated leucine zipper 120 154 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe01g0469 195 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 50 187 IPR050762 -
Hepe01g0469 195 FunFam Homeobox-leucine zipper protein 18 49 125 - -
Hepe01g0469 195 Pfam Homeodomain 64 118 IPR001356 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g0469 Hepe-Chr1:61314157 Hepe02g2673 Hepe-Chr2:74407427 6.90e-76 dispersed
Hepe01g0469 Hepe-Chr1:61314157 Hepe04g1352 Hepe-Chr4:69173731 4.01e-44 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54763 PF00046 Homeodomain 1.20E-16 CL0123 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe01g0469 K09338 - csv:101222713 364.385