Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe01g0476 ATGAACTCAACCAAATCCCTTCTCTCCATCATCTTCTTCTTCTTCTTCTTCATCATCACTTCATTTCCACTTCCAGCCACTCCATCTCCACCACTACTCCCACCCAAAGCACTTCCAACAAAAGCAGGCTATCTCCCAATCAACCCCACCTCCACCTCTTCCATTTACTTCGCCTTCTACGAAGCCCAAACCCCAATTTCTCCCCTCTCAAAAACCCCTCTTCTAATCTGGCTCCAAGGCGGCCCTGGCTGCTCCTCCATGATCGGCAACTTCTTCGAGCTCGGTCCATGGCGAGTCAATTTCCACAAACAACAAACCGAACCCATTTCCCTAATCCCCAATCCTGGCTCCTGGAATCGCAGATTTGGGGTTCTGTTTCTCGACAACCCAATTGGAACTGGCTTCAGCATTGCGGCTACACAAGATGAGATCCCTACAGATCAATACACTGTTTCTAAGCATCTTTTTGCTGCGATTTCTTCGTTTGTTGAGCTGGATTCGACGTTTAGGAATCGACCCATTTACATTACTGGGGAGAGCTATGCTGGGAAATATGTTCCCTCAATTGGGTATTACATTTTGAAGAGAAACCCCAAGTTGCCTCTTGGTAAGAGGCTGAATTTGGTTGGTGTTGCCATTGGAGATGGGCTGACAGACCCTATTACTCAAGTTGCCACACATGGGTTGAATGCTTTTTATTCTGGTTTGATCAATGAGAAGCAAAAAAGAGAGATGGAAATTGCTCAAATGGAGGCTGTGGAGTTAACTAAAATGGGTAATTGGAGTGAGGCAACAAATGCAAGGAGTAAGGTCTTGGATTTGCTCAAGAACATGACAGGATTAGCCACTTTATATGATTATACAAGAAAATCTCCTTACAATTCCGAATTGGTGGCCGAGTTTTTGAGGTCGAAGGAGGTGAAAAGGGCATTAGGAGTGAAGAATGAGTCTATGGTTTTCGAAGAGTGTAGCGATCTTGTTTGGGAGATTTTGAAGGATGATGTGATGAAGAGTGTAAGATATAAAGTGGATTTTTTGGTGAAGAATAGTAAGGTTTTGCTTTATCAAGGGCAGTTTGATTTGAGAGATGGTGTGGTTTCAACTGAGGCTTGGGTGAAGAAGTTGAAATGGGGTGAGATTGAGAAGTATTTAGAAGTAGATAGAAAGATTTGGAGAGTTGGAGATGAATTGGCTGGTTATGTTCAGAAATGGAAGAGTTTGAGTAATGTTGTTGTGTTGGGAGCTGGTCATCTTCTTCCAACTGATAAACCTTTGAATTCTCAAGCAATGATTGAAGATTGGGTTTTGGAGAAGGGAGTTTTTAGTGATGATAAAGAAGAAGAGAAGAAGCCTTTTGGTAGTAGTGCTTTTGAGGTTTGGATATAA 1386 42.78 MNSTKSLLSIIFFFFFFIITSFPLPATPSPPLLPPKALPTKAGYLPINPTSTSSIYFAFYEAQTPISPLSKTPLLIWLQGGPGCSSMIGNFFELGPWRVNFHKQQTEPISLIPNPGSWNRRFGVLFLDNPIGTGFSIAATQDEIPTDQYTVSKHLFAAISSFVELDSTFRNRPIYITGESYAGKYVPSIGYYILKRNPKLPLGKRLNLVGVAIGDGLTDPITQVATHGLNAFYSGLINEKQKREMEIAQMEAVELTKMGNWSEATNARSKVLDLLKNMTGLATLYDYTRKSPYNSELVAEFLRSKEVKRALGVKNESMVFEECSDLVWEILKDDVMKSVRYKVDFLVKNSKVLLYQGQFDLRDGVVSTEAWVKKLKWGEIEKYLEVDRKIWRVGDELAGYVQKWKSLSNVVVLGAGHLLPTDKPLNSQAMIEDWVLEKGVFSDDKEEEKKPFGSSAFEVWI 461
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 61636502 61639261 + Hsped.01g04760.1 Hepe01g0476 559586

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe01g0476 461 FunFam Carboxypeptidase 25 442 - -
Hepe01g0476 461 Gene3D alpha/beta hydrolase 33 449 IPR029058 -
Hepe01g0476 461 SUPERFAMILY alpha/beta-Hydrolases 38 435 IPR029058 -
Hepe01g0476 461 Coils Coil 238 258 - -
Hepe01g0476 461 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 41 434 IPR001563 GO:0004185(InterPro)|GO:0004185(PANTHER)|GO:0006508(InterPro)
Hepe01g0476 461 ProSitePatterns Serine carboxypeptidases, serine active site. 176 183 IPR018202 GO:0004185(InterPro)
Hepe01g0476 461 PRINTS Carboxypeptidase C serine protease (S10) family signature 162 187 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
Hepe01g0476 461 PRINTS Carboxypeptidase C serine protease (S10) family signature 127 137 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
Hepe01g0476 461 PRINTS Carboxypeptidase C serine protease (S10) family signature 407 420 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
Hepe01g0476 461 PRINTS Carboxypeptidase C serine protease (S10) family signature 114 126 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
Hepe01g0476 461 Pfam Serine carboxypeptidase 37 435 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe01g0476 K09645 - - csv:101205133 738.799
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g0476 Hepe-Chr1:61636502 Hepe02g2931 Hepe-Chr2:78365644 3.19e-51 dispersed
Hepe01g0322 Hepe-Chr1:47591064 Hepe01g0476 Hepe-Chr1:61636502 0.0 wgd
Hepe01g0476 Hepe-Chr1:61636502 Hepe05g0842 Hepe-Chr5:23397946 3.73e-27 wgd
Hepe01g0476 Hepe-Chr1:61636502 HepeContig66g0193 Hepe-ChrContig66:16493467 3.62e-37 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g424 . . . . . . . . . . . . . . Sed06g0201 . . Bhi07g00299 Tan04g1602 Cmetu10g0245 . Hepe01g0476 . . . . . . . . . . . . . Lsi04g01160 . . Cme10g01534 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011448 0 2 1 0 0 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 2 1 1 1 1 1 1 2 31