Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe01g0523 ATGGCCGGAATTGTCGCCGCCGACAGCGACACTCCACCGGCTTTGGCTCTACTGGGCTTTGTTCTCGATGTCGTTCGTATGTCGGCGGGGACCAACACTGGTGAGCTTTTCAAGAAGGATTGCACCGATCTCGTTCGTCGGATCGTGCTTTTGACGCATTTGTTTGAGGAGATCCGAGACTTCAATGCCCTCCAATTTCCTCCTGTTGATGCATCTTCTTCTTCCTCGTCTTCTTCTTCTTCTTCGATTCCATGGTTGTGTGATTTAGTCGCGGCATTGAAGGATACTAAGCGCCTCATTTTCATCGCTTCCACTTTCCGGTCCTGCACTTCTTCTTCTGAAGAAGTTTCTAAGAAGATACTCTTTCAATTCCAATGTGTGACGTGGAAGTTAGAGAAGGCATTGGGAAATATTCCTTATGACCGCTTTAATATATCAGAGGAAGTTCAAGAACAGGTTGAATTAGTGAGAGCTCAATTGAGAAGAGCAGCAGAAAAATATGGCTCTCTGACTGCAATTCCGCCATCGGTTGTTCAATCTCAGTTGCTGAAGAAAAACATGGATCAATTAAATCTGAACAACTGGGTTGATAACTTTGATGTCGAGGAGAATGGCGTTGTTGATCATGAGATTACAGTGAAATTTGATGTTTTTCCAAATTGTAGAGGCTTGATGAATAATGGTGTGGATCAGCTGATTTTCAAAGGACTTGAGAAACTTCCATCCTCTTCAGAGGTTTGTTCTGATGGACAGGTTGACCCTGCCAAAAACAATGGAGACCAGGTGAAGAGCTCAGATGGAGTTTCAATACCGGATGATTTTTTATGCCCCATTTCCCTTGAAATAATGAGGGATCCTGTTATTGTGTCCACAGGCCAGACGTATGAGAGATCTTATGTACAGAGATGGATAGATTGTGGGAATACCACTTGTCCCAAAACTCAGCAGAAGCTCCAAAATTTGACTCTCACCCCAAATTATGTACTGCGAAGTCTTGTTAGTCAATGGTGTGTTAATCACAATATTGAGCAACCAACAGGATTAACCAACGGAAAGATCAAAAAGTGTGACGGATCATACCGTGATGTGTGTGAGGAGATGGCAGCCATTGAAACTCTGGTCCGCAAGTTAACTAGTCATTCAATCGAGGAGCGGAGAGCTTCTGTGACAGAACTTCGATCTCTATCGAAAAGAAGCACAGATAATAGAATACTGATAGCGGAAGCAGGAGCAATTCCTGCTTTGGTCAATCTGTTAACTGCTGATGATGTTTTAATACAAGAAAATGCAGTTACTTCCATTCTCAACCTTTCAATATATGAGAATAACAAGGGACTAATTATGCTTGCTGGTGCAATACCTTCCATTGTTCAAGTTCTGAGAATTGGAAGCATGGAAGCGAGAGAAAATTCAGCAGCAACACTTTTCAGCTTGTCTCTTGCTGATGAAAATAGGATAATCATTGGTGCTTCTGGGGCCATTTCGGCTCTTGTCGATTTACTCGAAAATGGAAGCTCAAGAGGGAAGAAGGATGCTGCAACAGCACTATTTAATTTGTGTATTTATCAGGGGAACAAGGGAAGGGCTGTGAGAGCAGGGATCATTCCAGCTCTATTAAAGATGCTTACAAACTCAGTTAACTCCATGGTCGACGAAGCTCTCACGATAATGTCGGTTCTTGCCAGCCATCAAGAAGCAAAAGCAGCCATGGTGAAAGCCAGTACCATACCTGTTCTAATAGACCTGGTGAGGACTGGATTGCCTCGCAACAAAGAAAATGCTGCTGCTATTTTGCTTGCTTTGTGTAAGCGAGATACCGAAAATCTTTCTTGCATGAGTAGGCTCGGCGCCGTGATTCCACTGACCGAGCTCGCCAAGAGCGGAACAGAGAGAGCAAAAAGGAAGGCTACTTCACTGTTGGAGCATCTTCGAAAACTACAGCAGCTATAA 1950 43.64 MAGIVAADSDTPPALALLGFVLDVVRMSAGTNTGELFKKDCTDLVRRIVLLTHLFEEIRDFNALQFPPVDASSSSSSSSSSSIPWLCDLVAALKDTKRLIFIASTFRSCTSSSEEVSKKILFQFQCVTWKLEKALGNIPYDRFNISEEVQEQVELVRAQLRRAAEKYGSLTAIPPSVVQSQLLKKNMDQLNLNNWVDNFDVEENGVVDHEITVKFDVFPNCRGLMNNGVDQLIFKGLEKLPSSSEVCSDGQVDPAKNNGDQVKSSDGVSIPDDFLCPISLEIMRDPVIVSTGQTYERSYVQRWIDCGNTTCPKTQQKLQNLTLTPNYVLRSLVSQWCVNHNIEQPTGLTNGKIKKCDGSYRDVCEEMAAIETLVRKLTSHSIEERRASVTELRSLSKRSTDNRILIAEAGAIPALVNLLTADDVLIQENAVTSILNLSIYENNKGLIMLAGAIPSIVQVLRIGSMEARENSAATLFSLSLADENRIIIGASGAISALVDLLENGSSRGKKDAATALFNLCIYQGNKGRAVRAGIIPALLKMLTNSVNSMVDEALTIMSVLASHQEAKAAMVKASTIPVLIDLVRTGLPRNKENAAAILLALCKRDTENLSCMSRLGAVIPLTELAKSGTERAKRKATSLLEHLRKLQQL 649
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 63935206 63939723 + Hsped.01g05230.1 Hepe01g0523 559633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe01g0523 649 Coils Coil 629 649 - -
Hepe01g0523 649 FunFam RING-type E3 ubiquitin transferase 267 343 - -
Hepe01g0523 649 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 533 575 IPR000225 GO:0005515(InterPro)
Hepe01g0523 649 Gene3D - 547 648 IPR011989 -
Hepe01g0523 649 Pfam U-box domain 270 341 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Hepe01g0523 649 Gene3D - 464 546 IPR011989 -
Hepe01g0523 649 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 267 343 IPR013083 -
Hepe01g0523 649 FunFam RING-type E3 ubiquitin transferase 549 648 - -
Hepe01g0523 649 SUPERFAMILY ARM repeat 360 643 IPR016024 -
Hepe01g0523 649 ProSiteProfiles U-box domain profile. 269 343 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Hepe01g0523 649 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 410 452 IPR000225 GO:0005515(InterPro)
Hepe01g0523 649 Coils Coil 146 166 - -
Hepe01g0523 649 SMART Ubox_2 273 336 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Hepe01g0523 649 FunFam RING-type E3 ubiquitin transferase 447 547 - -
Hepe01g0523 649 SUPERFAMILY RING/U-box 264 343 - -
Hepe01g0523 649 Gene3D - 349 463 IPR011989 -
Hepe01g0523 649 SMART arm_5 399 439 IPR000225 GO:0005515(InterPro)
Hepe01g0523 649 SMART arm_5 563 603 IPR000225 GO:0005515(InterPro)
Hepe01g0523 649 SMART arm_5 440 480 IPR000225 GO:0005515(InterPro)
Hepe01g0523 649 SMART arm_5 605 645 IPR000225 GO:0005515(InterPro)
Hepe01g0523 649 SMART arm_5 481 521 IPR000225 GO:0005515(InterPro)
Hepe01g0523 649 SMART arm_5 522 562 IPR000225 GO:0005515(InterPro)
Hepe01g0523 649 FunFam RING-type E3 ubiquitin transferase 353 446 - -
Hepe01g0523 649 CDD RING-Ubox_PUB 271 323 IPR045210 -
Hepe01g0523 649 PANTHER U BOX DOMAIN-CONTAINING 37 645 - -
Hepe01g0523 649 Pfam Armadillo/beta-catenin-like repeat 482 520 IPR000225 GO:0005515(InterPro)
Hepe01g0523 649 Pfam Armadillo/beta-catenin-like repeat 399 438 IPR000225 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g0523 Hepe-Chr1:63935206 Hepe02g2667 Hepe-Chr2:74293810 2.12e-107 dispersed
Hepe01g0523 Hepe-Chr1:63935206 Hepe08g0796 Hepe-Chr8:7142474 1.83e-67 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe01g0523 - - - 0.0