Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe01g0551 ATGGCGTCGGCCACTTTGAGCACTTCAGCACGTCTTAAGCCCACCACAAGAGGAGAATCATTACAAAATTTGATTCCAAACAGACCCTTAAATTCAAAGGTGATTAATTTCTCCTTTTCTCAACGCGCCGCCGCGCGAGGGGTGGCGGTGACAGTGAGGTCGACGTGGAGGACGGTGGAGCATGGAGGGGCAGTGGCGGCTGAGGAGGATGAGGAGATGGGGAAGATCCGGCGGCTGCAGAACGGGTCCGACGTGCGAGGGGTGGCGATAGAAGGGGAGAAGGGGAGGGCGGTGAATCTCACAACGGCAGCGGTGGAGGCGATTGCTGAGAGTTTTGGGGAGTGGGTCATTGAGGGGTTAGAGAAGGAGACAGGGCGGCGCGTGGAGAAGCACGTGAGTGTTTCGGTGGGGAGAGACCCGAGGATTTCCGGCGGTGCTTTGAGTGTTGCAGTGTTCGCGGGAGTTAGTAGGGCGGGGTGTTTGGTGTTCGATATGGGACTCGCCACCACACCGGCGTGCTTCATGAGCACCGTTTTGCCTCCTTTTTCTTATGATGCTTCTATTATGTTGACAGCATCTCACTTACCATACACACGAAATGGGATGAAGTTTTTCACGAAGAGAGGAGGGCTGAGCTCGCCGGAGGTGGAGGAGATATGCGACAGAGCCGCCGTGAAGTACGCCAACAGACTGGTCAAAGTCTCCACCCTCCTCCGAACGCCGCCGTCCAGGGTGGATTTCATGGCGGCTTATTCACAGCATCTAAGAGAAATTATTAAGCAAAGAATCAACCATCCTTCGCATTATGACACTCCTCTTGAAGGATTTCAGATAATAGTGAATGCCGGTAACGGATCAGGAGGCTTCTTCACATGGGGTGTCTTGGACAAGCTCGGCGCAGACACGTTCGGCTCTCTCCATCTCAACCCAGACGGCATGTTCCCCAACCACATCCCCAATCCAGAGGACAAAACCGCCATGTCAGTCACCCGAGCCGCTGTCCTCGAACATGGAGCCGACCTCGGCGTCGTCTTCGACACCGATGTCGACCGCAGTGGCGTTGTAGACCATGAGGGGAACCCGATCAACGGCGACAAGCTCATTGCCCTAATGTCGGCCATCGTCCTCCGAGAGCACCCTGGCACGACCATCGTCACCGACGCCCGCACCAGTGTTGCCCTCACCAAGTTCATCACCAACCGTGGAGGGCAACATTGCTTGTACCGCGTCGGGTACCGCAATGTCATCGACAAAGGAATTCAGCTCAACGTGGACGGGGTCGAGACGCATCTCATGATGGAGACGTCGGGGCATGGGGCGCTTAGGGAGAATTATTTTTTGGATGATGGGGCTTACATGGTGGTGAAGATTATTATTGAAATGGTGAGAATGAAGGTTGAGGGATCGGATGAAGGGATTGGGAGTCTTATAAAAGATCTTGAGCAGCCATTGGAGTCTGTGGAATTGAGACTCAATGTGGTCTCTGAGCCAAGATTTGCCCAAGCAAAGGCTGTGGAGGCCATTGAGACATTCAGAAACTTTGTCCAGGAAGGGAAGGTTGAGGGATGGGAACTGGATTCATGTGGAGATTGTTGGGTTCACGAAGGCTGCTTGGTGGACTTGAATGACCATCCCAAGCCAATTGATGCTCAGATGTACAGGGTTAAAGTATATGATAAGGAAAATGGGGAAGTTGGTTGGGTACACTTAAGGCAAAGCATTCACAATCCAAACCTTGCTTTGAATATGCAATCATCTTTGGCTGGAGGCTGCCTCCAAATCACCAGAGACTTCAGAGATAAGTATGCACCTTCCTCCCACACAAGTTTAATTTAA 1836 52.72 MASATLSTSARLKPTTRGESLQNLIPNRPLNSKVINFSFSQRAAARGVAVTVRSTWRTVEHGGAVAAEEDEEMGKIRRLQNGSDVRGVAIEGEKGRAVNLTTAAVEAIAESFGEWVIEGLEKETGRRVEKHVSVSVGRDPRISGGALSVAVFAGVSRAGCLVFDMGLATTPACFMSTVLPPFSYDASIMLTASHLPYTRNGMKFFTKRGGLSSPEVEEICDRAAVKYANRLVKVSTLLRTPPSRVDFMAAYSQHLREIIKQRINHPSHYDTPLEGFQIIVNAGNGSGGFFTWGVLDKLGADTFGSLHLNPDGMFPNHIPNPEDKTAMSVTRAAVLEHGADLGVVFDTDVDRSGVVDHEGNPINGDKLIALMSAIVLREHPGTTIVTDARTSVALTKFITNRGGQHCLYRVGYRNVIDKGIQLNVDGVETHLMMETSGHGALRENYFLDDGAYMVVKIIIEMVRMKVEGSDEGIGSLIKDLEQPLESVELRLNVVSEPRFAQAKAVEAIETFRNFVQEGKVEGWELDSCGDCWVHEGCLVDLNDHPKPIDAQMYRVKVYDKENGEVGWVHLRQSIHNPNLALNMQSSLAGGCLQITRDFRDKYAPSSHTSLI 611
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 65065546 65072812 + Hsped.01g05510.1 Hepe01g0551 559661

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe01g0551 611 Pfam Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 79 222 IPR005844 GO:0005975(InterPro)|GO:0016868(InterPro)
Hepe01g0551 611 Gene3D - 356 478 - -
Hepe01g0551 611 PANTHER PHOSPHOHEXOSE MUTASE 70 598 IPR050060 GO:0004615(PANTHER)|GO:0009570(PANTHER)
Hepe01g0551 611 SUPERFAMILY Phosphoglucomutase, first 3 domains 363 465 IPR016055 GO:0005975(InterPro)|GO:0016868(InterPro)
Hepe01g0551 611 Gene3D - 277 355 - -
Hepe01g0551 611 FunFam phosphomannomutase/phosphoglucomutase isoform X1 80 236 - -
Hepe01g0551 611 Pfam Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 363 464 IPR005846 GO:0005975(InterPro)|GO:0016868(InterPro)
Hepe01g0551 611 CDD PMM_PGM 79 600 - -
Hepe01g0551 611 FunFam Phosphomannomutase/phosphoglucomutase isoform B 356 477 - -
Hepe01g0551 611 MobiDBLite consensus disorder prediction 1 24 - -
Hepe01g0551 611 Pfam Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 250 359 IPR005845 GO:0005975(InterPro)
Hepe01g0551 611 PRINTS Phosphoglucomutase/phosphomannomutase family signature 275 294 IPR005841 GO:0005975(InterPro)|GO:0016868(InterPro)
Hepe01g0551 611 PRINTS Phosphoglucomutase/phosphomannomutase family signature 186 200 IPR005841 GO:0005975(InterPro)|GO:0016868(InterPro)
Hepe01g0551 611 PRINTS Phosphoglucomutase/phosphomannomutase family signature 310 323 IPR005841 GO:0005975(InterPro)|GO:0016868(InterPro)
Hepe01g0551 611 PRINTS Phosphoglucomutase/phosphomannomutase family signature 339 354 IPR005841 GO:0005975(InterPro)|GO:0016868(InterPro)
Hepe01g0551 611 FunFam phosphomannomutase/phosphoglucomutase isoform X1 277 354 - -
Hepe01g0551 611 SUPERFAMILY Phosphoglucomutase, first 3 domains 81 229 IPR016055 GO:0005975(InterPro)|GO:0016868(InterPro)
Hepe01g0551 611 SUPERFAMILY Phosphoglucomutase, first 3 domains 250 361 IPR016055 GO:0005975(InterPro)|GO:0016868(InterPro)
Hepe01g0551 611 Gene3D - 80 234 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe01g0551 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g0551 Hepe-Chr1:65065546 Hepe02g2956 Hepe-Chr2:78833962 4.24e-123 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g450 . . . . . . Bma14g01883 . . . . . . . Sed01g2847 . . Bhi07g00357 Tan04g1549 Cmetu10g0494 . Hepe01g0551 . . Cla07g00577 Cam07g0604 Cec07g0674 Cco07g0644 Clacu07g0608 Cmu07g0641 Cre07g0980 Cone13ag0751 . . . Lsi04g01125 . Chy10g00233 Cme10g01586 . Blo11g00979 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009666 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 4 2 1 33