Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe01g0555 ATGGCGAAGTCCAAGAGCTTTTTACATAACCTCATCAAACCATTCAGATTCGGCTCCTCAAGAGATACCCAAGGCGAGGAGGATTTGGAGCAGATTGCAGCTAAGGAACAGAAGGTTATTCAGTTCGATACCTTAGTTGAAGCTACCAACAATTTTCACCAGAATAACAAGCTTGGCGAAGGAGGATTTGGTCCAGTTTACAAGGGGAAGTTAAAAGATGGAAGAGTGATTGCAGTTAAGAAGTTATCGCATTATTCGAAACAAGGGAGAAAGGAGTTTATGACTGAGGCCAAGTTATTGGCTCGTGTGCAGCACAGAAATGTCGTCAATTTGTTGGGATACTGTGTTCATGGTTCAGAGAAACTACTGGTTTACGAATACGTCACGAATGAGAGCCTCGACAAGCTTCTCTTTAAATCGAGCAGACGAGGAGAACTTGATTGGAAGAGGAGGTATGACATAATTTTTGGCATAGCACGAGGGTTGCAATATCTTCATGTAGACTCACATAATGTCATTATCCATCGTGACATTAAGGCTAGTAACATTTTGTTGGACGATAAATGGGTCCCTAAGATCGCGGATTTTGGCATGGCTCGTCTCTTCCCTGAAGATCAAACTCATGTCAATACTCGTGTTGCTGGTACAAATGGATATATGGCTCCTGAATATGTAATGCACGGTCATCTATCGGCAAAGGCAGATGTTTTCAGCTTTGGCGTTTTGGTCCTCGAACTCACCAGTGGCCAGCGAAACTCGTCATTTAGTTCATTTTTGGACGCCGAAAGTCTACTTGATTGGGCTTACAAGCTACACAAGAAGGGCAGGAGCTTGGAAATCATGGACCCAACATTAGCATCATCAGCTATTCCTGACCAAGTTACAATGTGCATTCAGATAGGATTGCTCTGCACACAAGGCGATCCGCAACTACGGCCGACCATGCCACGTGTAGTTTTGATCCTTTCAAAAAGACCTGGTACTTTGGAGGAACCAACGAGGCCAGGAATTCCCGGTTCTCGGTATAGAAGAACTCGTAGGGCAAGTGCATCGTCCTCCAATGCTGGAACTTCTGGTGCATCTTATTCCTCTGCTTCGACGACCAATACCAATACCGTTACTGGAACCATAACTGCAACTGCACCTGCAACCGCAAACGTGACCGAAATTGCTTCTGGTTCTGGTTCTTCTTCAGTTAGTCGAGGACACGATACTCGTGGGAAACGTCCCATGGAAGGTTAG 1242 45.09 MAKSKSFLHNLIKPFRFGSSRDTQGEEDLEQIAAKEQKVIQFDTLVEATNNFHQNNKLGEGGFGPVYKGKLKDGRVIAVKKLSHYSKQGRKEFMTEAKLLARVQHRNVVNLLGYCVHGSEKLLVYEYVTNESLDKLLFKSSRRGELDWKRRYDIIFGIARGLQYLHVDSHNVIIHRDIKASNILLDDKWVPKIADFGMARLFPEDQTHVNTRVAGTNGYMAPEYVMHGHLSAKADVFSFGVLVLELTSGQRNSSFSSFLDAESLLDWAYKLHKKGRSLEIMDPTLASSAIPDQVTMCIQIGLLCTQGDPQLRPTMPRVVLILSKRPGTLEEPTRPGIPGSRYRRTRRASASSSNAGTSGASYSSASTTNTNTVTGTITATAPATANVTEIASGSGSSSVSRGHDTRGKRPMEG 413
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 65469028 65473825 - Hsped.01g05550.1 Hepe01g0555 559665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe01g0555 413 SUPERFAMILY Protein kinase-like (PK-like) 38 339 IPR011009 -
Hepe01g0555 413 MobiDBLite consensus disorder prediction 326 373 - -
Hepe01g0555 413 Gene3D Phosphorylase Kinase; domain 1 17 127 - -
Hepe01g0555 413 SMART serkin_6 52 321 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe01g0555 413 FunFam Cysteine-rich receptor-like protein kinase 10 16 127 - -
Hepe01g0555 413 Gene3D Transferase(Phosphotransferase) domain 1 128 330 - -
Hepe01g0555 413 MobiDBLite consensus disorder prediction 345 373 - -
Hepe01g0555 413 CDD STKc_IRAK 58 324 - -
Hepe01g0555 413 MobiDBLite consensus disorder prediction 388 413 - -
Hepe01g0555 413 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 31 358 IPR052059 GO:0004674(PANTHER)|GO:0006468(PANTHER)
Hepe01g0555 413 ProSiteProfiles Protein kinase domain profile. 52 328 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe01g0555 413 ProSitePatterns Serine/Threonine protein kinases active-site signature. 173 185 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Hepe01g0555 413 FunFam Cysteine-rich receptor-like protein kinase 10 129 334 - -
Hepe01g0555 413 Pfam Protein kinase domain 52 317 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g0555 Hepe-Chr1:65469028 Hepe07g1974 Hepe-Chr7:63703114 3.08e-94 dispersed
Hepe09g0428 Hepe-Chr9:3878919 Hepe01g0555 Hepe-Chr1:65469028 8.20e-100 transposed
Hepe01g0555 Hepe-Chr1:65469028 Hepe10g0900 Hepe-Chr10:28740608 4.51e-44 wgd
Hepe01g0555 Hepe-Chr1:65469028 Hepe02g2644 Hepe-Chr2:73932113 4.26e-18 wgd
Hepe01g0555 Hepe-Chr1:65469028 Hepe07g1107 Hepe-Chr7:18724577 2.90e-93 wgd
Hepe01g0555 Hepe-Chr1:65469028 Hepe07g1347 Hepe-Chr7:44115769 1.34e-91 wgd
Hepe01g0555 Hepe-Chr1:65469028 HepeContig65g0075 Hepe-ChrContig65:6350091 1.09e-68 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
72443 PF00069 Pkinase 1.20E-49 CL0016 Hepe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe01g0555 - - - 0.0