Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe01g0588 ATGGCAGAACTGTCGAATCTCTCCTCGAGCCCCAGCCAAGAAACTCCGAACGTGCTGCAGAAACATGTGGCGTTCTTCGATAGGAACAAAGACGGCGTCGTTTATCCTTGGGAAACCTTCAAGGGCTTCCGAGCAATCGGAGCCAATTTGTTCTTGTCCACCGTCAGTGCTGTTTTTATTAACGTTGGACTCAGCTCGAAAACCCGACCGGGGAAATTTCCTAACCTTCTGTTCCCAATTGAGATAAAGAACATTCAACTTGGCAAGCATGGAAGTGATTCTGGTGTTTATGATACTGAAGGAAGGTTTGTTGCATCAAGATTTGAAGAAATTTTCAAGAAGCATGCACTAACCTATCCAGATGCCTTGACAGAAGAAGAGCTTAAAGCTTTGCTCAAGGCAAATAGAGAGCCCAAAGACTACGCAGGATGGGTTGGTGCATGGGCAGAATGGACAACTCTGTACAGCCTTTGCAAAGATGAGAATGGTTTACTTACAAAGAAAACTGTGGAGGCTGTTTATGATGGAAGCTTATTTGAACATATGGAGAGAGAGAAGAAGACAGCATTACAAATTAAGAAATGA 585 43.76 MAELSNLSSSPSQETPNVLQKHVAFFDRNKDGVVYPWETFKGFRAIGANLFLSTVSAVFINVGLSSKTRPGKFPNLLFPIEIKNIQLGKHGSDSGVYDTEGRFVASRFEEIFKKHALTYPDALTEEELKALLKANREPKDYAGWVGAWAEWTTLYSLCKDENGLLTKKTVEAVYDGSLFEHMEREKKTALQIKK 194
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 66891531 66906765 + Hsped.01g05880.1 Hepe01g0588 559698

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe01g0588 194 Pfam Caleosin related protein 17 182 IPR007736 -
Hepe01g0588 194 PANTHER PEROXYGENASE 3-RELATED 11 187 IPR007736 GO:0004497(PANTHER)|GO:0005509(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe01g0588 K17991 - - csv:101213829 318.546
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g0573 Hepe-Chr1:66408163 Hepe01g0588 Hepe-Chr1:66891531 1.68e-120 dispersed
Hepe01g0588 Hepe-Chr1:66891531 Hepe03g0310 Hepe-Chr3:4277812 1.63e-59 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe01g0573 . 12 192 Pollen Coat Proteome AT1G23240 54.7 1.3e-57 219.9
Hepe01g0588 . 13 189 Pollen Coat Proteome AT1G23240 55.9 3.9e-57 218.4
Hepe01g0573 . 12 192 Pollen Coat Proteome AT1G23240 54.7 1.3e-57 219.9
Hepe01g0588 . 13 189 Pollen Coat Proteome AT1G23240 55.9 3.9e-57 218.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007695 2 1 0 0 3 1 2 1 1 0 1 1 2 1 1 2 1 2 1 1 1 1 2 1 1 1 1 2 1 1 36