Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe01g0598 ATGCCAATGGCGAAAAACTATGACGAACCGGAGTTTCAGAGCTCCGGCAAGAGGCTAAAATGCTCTAAGCACGACGATGAACAGCTCGAAAATGAAGAAGAAGAAGATGAAGAAGAAGATGAAGAAGAGCAGGTGAGCGAGCTTCCATTGAAGCCTGGCCTCTTCTTCTACCCAATGACGCCAACTTCCTTCGTTGTCTCCGATGCTCTCGAGCCCGATTTCCCCATCATCTACGTCAACAAAGTCTTCGAGATCTTCACCGGATACCGCGCCGATGAGGTCCTCGGCCAGAATTGTCGGTTCTTACAATATAGAGATCCTCGTGCACAAAGGCGCCACCCTTTGCTAGATCCGGTGGTTGTTTCTGAAATCAGAAGATGTCTTGAGGAAGGTGTTGAGTTCCAAGGTGAACTCCTCAATTTCCGGAAGGATGGCACGCCTATGGTGAACAGATTACGGCTTGCACCCATACATGATGATGATGGTACTGTAACACACATTATAGGAATTCAAGTGTTTTCTGAGACAAAGATAGACCTTAGTCGGTTATCATATCCCGTTTTCAAAGAAACTTTTGCCAAACAATATGATCTATCAGGCAAAAGTGCTCATCTGATTGATCAATCACCATTTGGTCAGTATAAAGAGATCTGTGGGATACTGCAGCTTCCAGATGAAGTCTTGGCCCATAACATTTTATCACGCTTGACACCGAGAGATGTTGCATCTGTTGGATCAGTATGCCGAAGGATTCGCCAATTGACGAAGAATGAGCATTTAAGGAAGATGGTATGTCAGAATTCATGGGGAAGAGAAGTGACTGGAACATTGGAACAAATGACAAAGAAACTCGGTTGGGGGCGCTTGACCAGAGAACTTACAACTCTTGAAGCTGTACGTTGGAGAAAAATGACAGTTGGGGGAGCTGTGGAACCTTTACGTTGCAACTTTAGTGCTTGTGCTGCAGGTAATCGACTCGTTTTATTCGGTGGGGAAGGAGTCAATATGCAGCCCATGGATGATACCTTTGTTCTCAATCTTGATGCTGTGAATCCAGAGTGGCGCAGAGTAAGCGTGAAATCCTCCCCACCTGGACGTTGGGGCCACACTCTATCATGTTTGAATGGTTCTTCGTTAGTGGTTTTTGGTGGATGTGGCAGTCAAGGATTGCTCAACGACGTGTTTGTACTCGATTTGGATGCTCAACAACCAACATGGAAAGAAATCTTTGGTGGAGCTCCTCCATTGCCTAGATCCTGGCATAGCTCCTGTATGATCGAAGGTTCTAAACTGGTTGTTTCAGGTGGATGCACAGATGCCGGGGTGCTTCTCAGTGACACATTCTTGTTGGATCTAACAATAGACAACCCAACTTGGAGAGAGATTCCCACATCCGGGACTCCCCCATGTAGATTGGGACATTCTCTTTCAGTTTATGGTCGGACAAAGATTCTAATGTTTGGTGGACTTGCCAAGAGCGGAAACTTACGTTTACGATCGGGCGAGGCGTACACCATAGATTTAGAAGAGGAAGAACCCCGGTGGAGGCAACTCGAGTGCAGTGCATTCACTGGCATAGGCGGTCAGAATGCTGTGGTTCCTCCACCAAGACTCGATCACGTAGCAGTCAGCATGCCCTGTGGAAGGGTTATCATTTTTGGAGGCTCCATTGCCGGGTTACATTCGCCTTCTCAACTATTCCTTTTGGATCCGTCCGAGGAAAAACCGACGTGGAGGATTCTTAATGTTCCTGGACAACCACCTAAATTTTCTTGGGGCCACAGTACTTGTGTGGTTGGAGGGACGAGAGTTTTGGTATTGGGCGGCCACACGGGGGAAGAATGGATACTCAATGAATTGCACGAACTCTGCTTAGCTAGCAAGCAAGATTCAGATCTTTGA 1902 46.9 MPMAKNYDEPEFQSSGKRLKCSKHDDEQLENEEEEDEEEDEEEQVSELPLKPGLFFYPMTPTSFVVSDALEPDFPIIYVNKVFEIFTGYRADEVLGQNCRFLQYRDPRAQRRHPLLDPVVVSEIRRCLEEGVEFQGELLNFRKDGTPMVNRLRLAPIHDDDGTVTHIIGIQVFSETKIDLSRLSYPVFKETFAKQYDLSGKSAHLIDQSPFGQYKEICGILQLPDEVLAHNILSRLTPRDVASVGSVCRRIRQLTKNEHLRKMVCQNSWGREVTGTLEQMTKKLGWGRLTRELTTLEAVRWRKMTVGGAVEPLRCNFSACAAGNRLVLFGGEGVNMQPMDDTFVLNLDAVNPEWRRVSVKSSPPGRWGHTLSCLNGSSLVVFGGCGSQGLLNDVFVLDLDAQQPTWKEIFGGAPPLPRSWHSSCMIEGSKLVVSGGCTDAGVLLSDTFLLDLTIDNPTWREIPTSGTPPCRLGHSLSVYGRTKILMFGGLAKSGNLRLRSGEAYTIDLEEEEPRWRQLECSAFTGIGGQNAVVPPPRLDHVAVSMPCGRVIIFGGSIAGLHSPSQLFLLDPSEEKPTWRILNVPGQPPKFSWGHSTCVVGGTRVLVLGGHTGEEWILNELHELCLASKQDSDL 633
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 67166907 67169847 - Hsped.01g05980.1 Hepe01g0598 559708

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe01g0598 633 Pfam F-box-like 220 266 IPR001810 GO:0005515(InterPro)
Hepe01g0598 633 SUPERFAMILY F-box domain 214 272 IPR036047 GO:0005515(InterPro)
Hepe01g0598 633 FunFam Putative LOV domain-containing protein 497 629 - -
Hepe01g0598 633 CDD PAS 60 170 IPR000014 -
Hepe01g0598 633 Gene3D - 290 517 IPR015915 GO:0005515(InterPro)
Hepe01g0598 633 CDD F-box_AtADO-like 219 265 - -
Hepe01g0598 633 MobiDBLite consensus disorder prediction 28 45 - -
Hepe01g0598 633 Pfam Galactose oxidase, central domain 428 479 - -
Hepe01g0598 633 Pfam Galactose oxidase, central domain 376 424 - -
Hepe01g0598 633 SUPERFAMILY Galactose oxidase, central domain 301 618 IPR011043 -
Hepe01g0598 633 Pfam Kelch motif 538 585 IPR011498 GO:0005515(InterPro)
Hepe01g0598 633 PANTHER BACTERIOOPSIN TRANSCRIPTIONAL ACTIVATOR 59 628 - GO:0005634(PANTHER)|GO:0005829(PANTHER)|GO:0007623(PANTHER)|GO:0009637(PANTHER)|GO:0019005(PANTHER)
Hepe01g0598 633 SMART pac_2 135 176 IPR001610 -
Hepe01g0598 633 MobiDBLite consensus disorder prediction 1 45 - -
Hepe01g0598 633 Pfam PAS domain 70 171 IPR000014 -
Hepe01g0598 633 ProSiteProfiles PAS repeat profile. 76 107 IPR000014 -
Hepe01g0598 633 Gene3D - 518 632 IPR015915 GO:0005515(InterPro)
Hepe01g0598 633 MobiDBLite consensus disorder prediction 11 27 - -
Hepe01g0598 633 NCBIfam PAS domain S-box protein 75 170 IPR000014 -
Hepe01g0598 633 Gene3D PAS domain 58 182 - -
Hepe01g0598 633 FunFam Putative LOV domain-containing protein 291 496 - -
Hepe01g0598 633 Pfam Galactose oxidase, central domain 314 364 - -
Hepe01g0598 633 Coils Coil 19 44 - -
Hepe01g0598 633 SUPERFAMILY PYP-like sensor domain (PAS domain) 71 171 IPR035965 -
Hepe01g0598 633 Gene3D - 215 264 - -
Hepe01g0598 633 SMART fbox_2 223 263 IPR001810 GO:0005515(InterPro)
Hepe01g0598 633 FunFam Adagio protein 1 54 182 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe01g0598 K12116 - - csv:101222712 1190.25
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g0598 Hepe-Chr1:67166907 Hepe08g2122 Hepe-Chr8:60135387 2.79e-295 dispersed
Hepe01g0598 Hepe-Chr1:67166907 Hepe01g0239 Hepe-Chr1:36446333 3.93e-19 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g502 . Blo16g00757 . Bda11g00188 Bpe13g01006 . . . Cmo04g01103 . Cma04g01032 Cma04g00079 Car04g00963 Car04g00078 Sed04g2999 . . Bhi07g00405 Tan04g1496 Cmetu10g0634 Lac13g1318 Hepe01g0598 . . Cla07g00531 Cam07g0573 Cec07g0622 Cco07g0597 Clacu07g0576 Cmu07g0611 Cre07g0943 . . Cone6ag0358 Cone9ag0388 Lsi04g01097 . . . . . . Bda11g00188 . . . Bma06g01132 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008842 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 34