Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe01g0602 ATGGACGACTCTGGCGCCAATAATAATGCGCTGATCCAGATGAGAAAATCCGTGGAGAAATCAGGCTTCTCGACACAAGAGTACTGCGATGCGACGATGATGAGGTTTCTGATTGCGAGATCGATGGAGCCGTCGAAAGGAGCGAAGATGTTCGTACAATGGCGGAAATGGAGAGAGGCGATGGTTCCGAAGGGATTCGTCTGTGAATCGGAGGTTGAAGAGGAGTTGAAGGCTAGGAAGATTTTCTTGCAGGGATTGTCCAACAAGGGATTCGCCGTCATGATTGTTATGGCCAATCGCCATTTTCATTCCAAGGATCAACTCCAGTTTAAGAAGTTTCTTGTTCATCTCTTGGACAAGATCATTGCAAGGGGTTGTAAAGGAAGAGAAATTGGGAATGAAAAGTGGATTGCCGTTGTTGATCTTCAGCAAATCTCATATAAAAATGTTGATCCACGTGGACTCATCACAGGGTTTCAATTTTTACAGAATTACTATCCAGAACGCTTGGGGAAGTGCTTCATTTTAAACATGCCATGGTTTTTCGTTAGCGTTTGGAGAATGGTTTCTCGGTTTGTCGATAGCGCAACGCTCAAAAACATTTTAATAGTAAGCAATGAAGAAGAAAGAAGAATTATGTTAGAGGAGGTTGGAGAAGATGTATTGCCAGATGAGTATGGTGGAAAGGCCAAGTTTATTGCTCTTCAAGATGCTGTCTTTCCTCACTTGGATGGTGTCTATTCAGTAAAAAGCGGATACAGGTTAGCTCAGTCTCGAAGGCTTCAGATAGAGGCGTCTGTGTCCTCAGTAAAGTATTTGACGCGTTGGTGGAATGGGGTATGGAAGATGGGTATTCCAAGTTTATTGCAACTTCACCCCGAAGGGGACATAACTTGCTTGTTATGGTCCCTACAGGAGAAATTGGGTTGGTTGGACTTCAAGGAGCTATGTGCGTTGTTGTGGGGAGTTTGGTTAGGGCGTAACCAGGCTTGTTATTCGGGGCGTAGGCCTTCCACTGATATTGGGGGATGGACTGCCAATTACGTGGACTCATTTCGGGAGGCCAATAAGAAGGGGGGTTTGGAGGGAGTTTTGGCGAGGAAGGATCGAGAGGAGGTGAGGTGGGCGGCCCCTCCGCGTGGTGTGTATAAGGTCAATGTGGATGCCGGATTCGTGACTGCGAACCAAATGGCAGGTGTGGGGGTGGTAGTGCGAGACTTTCGCGGTTGTGTTATGTTGTCAGGCGTGTTATGGGTGCCTAATGTTCAGAATGTTTTGATGGCGGAGAGTCTTGCTGCATCTGAGGGTCTTTTGTTGGCGTGGGAGGCGGGTTTGAGTCCGATCATATTAGAAACTGATTCATTACAGTTGTGTAGATTGTTTGAGGATGGTATTGAGAATGTGACTGAAGTTGGTACTTTGATTGCGGATGTATGTTTGCGGTTTCCTCGTTCTTTCATGGAGCGTTGTTGCTTCATTCAGAGAAAAGGAAATATGTTGGCTCACGAGCTGGCACAGATGGCCTTGGGTCTTCAACAACGCTTGGTTTGGATGGAGGAAATTCCTTCAGTTCTTGAATCTTTTTATTTGCAGGATTTGATTGTGGTTTGA 1611 45.93 MDDSGANNNALIQMRKSVEKSGFSTQEYCDATMMRFLIARSMEPSKGAKMFVQWRKWREAMVPKGFVCESEVEEELKARKIFLQGLSNKGFAVMIVMANRHFHSKDQLQFKKFLVHLLDKIIARGCKGREIGNEKWIAVVDLQQISYKNVDPRGLITGFQFLQNYYPERLGKCFILNMPWFFVSVWRMVSRFVDSATLKNILIVSNEEERRIMLEEVGEDVLPDEYGGKAKFIALQDAVFPHLDGVYSVKSGYRLAQSRRLQIEASVSSVKYLTRWWNGVWKMGIPSLLQLHPEGDITCLLWSLQEKLGWLDFKELCALLWGVWLGRNQACYSGRRPSTDIGGWTANYVDSFREANKKGGLEGVLARKDREEVRWAAPPRGVYKVNVDAGFVTANQMAGVGVVVRDFRGCVMLSGVLWVPNVQNVLMAESLAASEGLLLAWEAGLSPIILETDSLQLCRLFEDGIENVTEVGTLIADVCLRFPRSFMERCCFIQRKGNMLAHELAQMALGLQQRLVWMEEIPSVLESFYLQDLIVV 536
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 67256012 67268370 + Hsped.01g06020.1 Hepe01g0602 559712

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe01g0602 536 SUPERFAMILY CRAL/TRIO domain 70 234 IPR036865 -
Hepe01g0602 536 Gene3D - 381 510 IPR036397 GO:0003676(InterPro)
Hepe01g0602 536 CDD RNase_H_like 385 505 IPR044730 -
Hepe01g0602 536 Pfam Reverse transcriptase-like 386 508 IPR002156 GO:0003676(InterPro)|GO:0004523(InterPro)
Hepe01g0602 536 CDD SEC14 73 229 IPR001251 -
Hepe01g0602 536 PANTHER OS03G0850700 PROTEIN 6 239 - -
Hepe01g0602 536 SUPERFAMILY CRAL/TRIO N-terminal domain 8 66 IPR036273 -
Hepe01g0602 536 SUPERFAMILY Ribonuclease H-like 382 518 IPR012337 -
Hepe01g0602 536 SMART sec14_4 75 231 IPR001251 -
Hepe01g0602 536 Pfam CRAL/TRIO domain 79 228 IPR001251 -
Hepe01g0602 536 Gene3D - 4 258 IPR036865 -
Hepe01g0602 536 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 69 234 IPR001251 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe01g0602 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g0602 Hepe-Chr1:67256012 Hepe05g1278 Hepe-Chr5:60351827 2.10e-186 dispersed
Hepe01g0602 Hepe-Chr1:67256012 Hepe01g0604 Hepe-Chr1:67304987 1.73e-109 proximal
Hepe01g0602 Hepe-Chr1:67256012 Hepe01g0611 Hepe-Chr1:67399595 3.86e-10 proximal
Hepe05g1052 Hepe-Chr5:50619641 Hepe01g0602 Hepe-Chr1:67256012 1.02e-43 transposed
Hepe01g0109 Hepe-Chr1:12159994 Hepe01g0602 Hepe-Chr1:67256012 1.09e-151 wgd
Hepe01g0602 Hepe-Chr1:67256012 HepeContig66g0140 Hepe-ChrContig66:11719031 1.36e-77 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g505 . . . . . Bpe10g01002 . Bma15g00025 Cmo04g01105 . Cma04g01034 Cma04g00080 Car04g00965 Car04g00080 Sed04g0300 . . Bhi07g00408 Tan04g1492 Cmetu10g0732 Lac13g1311 Hepe01g0602 . . Cla07g00528 Cam07g0570 Cec07g0617 Cco07g0593 Clacu07g0570 Cmu07g0607 Cre07g0940 . . . . Lsi04g01095 . . . Blo06g01032 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002811 1 3 1 1 1 2 3 2 2 2 2 2 1 2 2 2 2 0 2 2 2 2 2 2 2 1 2 4 3 1 56