Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe01g0626 ATGGAGACCTCCGCTTCCAATTCTGATCCTTACTCCAATTCTTCTTCTTCTTCTTCTTCACCCACAACTGCTCGTACCTCCTCCAGATTTGGGGTCTCGCTCCCTTCCCTCAATTTCTTCCGTTCGCCTTTGTCCGTCATTTTGGATTACTCTGGAATTCTTCCCACCAGGGCTGTTCGTCACGAATCGGAGCCTGTAATCAACGGCTCTGCCACTCCTGATTTGCGGGTTTTTTCTCAAAATCAGAATCACTTGATGCCCACTTCTTCTTCTTCGTCGTCTTCTTCTTCTTCTTCTTCTTCTCCTACTGCCACCTCCTCCTCCTCCTCCTCCGGTAGTATCAGCTCCTCCGGGGAGGTTTCGATTAGGATTATTGGGTCTGGTGAGCAAGATCCTTCTCCCAGTGGATTGTTGCCGAATCAGGAAGCTGGTTATGAGCAAAATGGCGGAATTCCTGTTTCTGGGGATCGGCCAGAATCCCCTGATGAGGAACGAGTTCCTTTGGTGTCCACCGCTTCTTCATCTACTCAATCTGGAAGCAGTCGTGTCGATGGAGAATCTGGAAATGGCGTGGAAGAGAGTGTTAATAGAGATTCTTCTTATCAGAGATATGATATTCAGCAGGTTGCTAGATGGATTGAACAGATTCTTCCATTCTCTTTGCTATTGCTGATAGTTTTTATCCGTCAGCATTTAGAAGGTTTTTTCATCGCAATTTGGATATCAGCTGTTATGTACAAGTCAAACGATATTGTCAAGAAACAGACTGCTCTAAAGGGAGAGAGGAAAATTTCTGTTCTTGCTGGTACTTCTATCGCATTTTTGATTCATGTAGTTGGGATTTACTGGTGGTGTCATAGTGATGATCTTCTGTACCCGTTAGTCATGCTACCACCAAAGACAGTGCCACCGTTTTGGCATGCCTTGTTCATCATTTTGGTTAACGATACGATGGTGAGGCAGGCTACAATGGCTCTCAAATGTTTTCTTCTTATTTACTACAAGAATGGCAGAGGTCATAATTTTCGCCGACAGGGTCAAATTTTAACTCTCGTGGAATACACTCTTCTGTTGTACCGTGCGTTATTACCAACACCTGTATGGTACCGGTTCTTCTTGAACAAAGATCAAGGAAGCCTCTTTTCATCACTGACAACAGGATTGTATTTAACTTTCAAGCTAACGTCTGTTGTTGAAAAGATTCAATCATTCGTTGCTGCATTTAAGGCCCTGTCACGGAAAGAAGTCCACTATGGATCATACGCCACATCAGAACAGGTAAATGCTGCGGGAGACCTCTGTGCTATTTGCCAGGAGAAGATGAATGCACCAATCCTGTTACGTTGTAAGCACATCTTCTGTGAAGATTGTGTTTCTGAATGGTTTGAAAGAGAAAGAACTTGCCCTCTTTGCCGGGCACTAGTAAAGCCTGCAGAACTTCGAACATTTGGCGATGGGTCAACCAGCTTACTCTTCCAGTTGTTTTAG 1488 44.42 METSASNSDPYSNSSSSSSSPTTARTSSRFGVSLPSLNFFRSPLSVILDYSGILPTRAVRHESEPVINGSATPDLRVFSQNQNHLMPTSSSSSSSSSSSSSPTATSSSSSSGSISSSGEVSIRIIGSGEQDPSPSGLLPNQEAGYEQNGGIPVSGDRPESPDEERVPLVSTASSSTQSGSSRVDGESGNGVEESVNRDSSYQRYDIQQVARWIEQILPFSLLLLIVFIRQHLEGFFIAIWISAVMYKSNDIVKKQTALKGERKISVLAGTSIAFLIHVVGIYWWCHSDDLLYPLVMLPPKTVPPFWHALFIILVNDTMVRQATMALKCFLLIYYKNGRGHNFRRQGQILTLVEYTLLLYRALLPTPVWYRFFLNKDQGSLFSSLTTGLYLTFKLTSVVEKIQSFVAAFKALSRKEVHYGSYATSEQVNAAGDLCAICQEKMNAPILLRCKHIFCEDCVSEWFERERTCPLCRALVKPAELRTFGDGSTSLLFQLF 495
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 68078508 68086074 - Hsped.01g06260.1 Hepe01g0626 559736
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe01g0626 495 CDD RING-HC_RNFT1-like 432 472 - -
Hepe01g0626 495 MobiDBLite consensus disorder prediction 84 123 - -
Hepe01g0626 495 MobiDBLite consensus disorder prediction 84 197 - -
Hepe01g0626 495 PANTHER UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN 10 495 IPR044235 GO:0061630(PANTHER)|GO:0061630(InterPro)|GO:1904294(InterPro)
Hepe01g0626 495 MobiDBLite consensus disorder prediction 1 29 - -
Hepe01g0626 495 SMART ring_2 434 471 IPR001841 -
Hepe01g0626 495 ProSiteProfiles Zinc finger RING-type profile. 434 472 IPR001841 -
Hepe01g0626 495 SUPERFAMILY RING/U-box 427 477 - -
Hepe01g0626 495 MobiDBLite consensus disorder prediction 167 197 - -
Hepe01g0626 495 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 408 481 IPR013083 -
Hepe01g0626 495 ProSitePatterns Zinc finger RING-type signature. 449 458 IPR017907 -
Hepe01g0626 495 Pfam Ring finger domain 433 472 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g0626 Hepe-Chr1:68078508 Hepe04g0661 Hepe-Chr4:60008552 1.15e-190 dispersed
Hepe06g1524 Hepe-Chr6:65926316 Hepe01g0626 Hepe-Chr1:68078508 3.19e-07 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe01g0626 - - - 0.0