Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Hepe01g0626 | ATGGAGACCTCCGCTTCCAATTCTGATCCTTACTCCAATTCTTCTTCTTCTTCTTCTTCACCCACAACTGCTCGTACCTCCTCCAGATTTGGGGTCTCGCTCCCTTCCCTCAATTTCTTCCGTTCGCCTTTGTCCGTCATTTTGGATTACTCTGGAATTCTTCCCACCAGGGCTGTTCGTCACGAATCGGAGCCTGTAATCAACGGCTCTGCCACTCCTGATTTGCGGGTTTTTTCTCAAAATCAGAATCACTTGATGCCCACTTCTTCTTCTTCGTCGTCTTCTTCTTCTTCTTCTTCTTCTCCTACTGCCACCTCCTCCTCCTCCTCCTCCGGTAGTATCAGCTCCTCCGGGGAGGTTTCGATTAGGATTATTGGGTCTGGTGAGCAAGATCCTTCTCCCAGTGGATTGTTGCCGAATCAGGAAGCTGGTTATGAGCAAAATGGCGGAATTCCTGTTTCTGGGGATCGGCCAGAATCCCCTGATGAGGAACGAGTTCCTTTGGTGTCCACCGCTTCTTCATCTACTCAATCTGGAAGCAGTCGTGTCGATGGAGAATCTGGAAATGGCGTGGAAGAGAGTGTTAATAGAGATTCTTCTTATCAGAGATATGATATTCAGCAGGTTGCTAGATGGATTGAACAGATTCTTCCATTCTCTTTGCTATTGCTGATAGTTTTTATCCGTCAGCATTTAGAAGGTTTTTTCATCGCAATTTGGATATCAGCTGTTATGTACAAGTCAAACGATATTGTCAAGAAACAGACTGCTCTAAAGGGAGAGAGGAAAATTTCTGTTCTTGCTGGTACTTCTATCGCATTTTTGATTCATGTAGTTGGGATTTACTGGTGGTGTCATAGTGATGATCTTCTGTACCCGTTAGTCATGCTACCACCAAAGACAGTGCCACCGTTTTGGCATGCCTTGTTCATCATTTTGGTTAACGATACGATGGTGAGGCAGGCTACAATGGCTCTCAAATGTTTTCTTCTTATTTACTACAAGAATGGCAGAGGTCATAATTTTCGCCGACAGGGTCAAATTTTAACTCTCGTGGAATACACTCTTCTGTTGTACCGTGCGTTATTACCAACACCTGTATGGTACCGGTTCTTCTTGAACAAAGATCAAGGAAGCCTCTTTTCATCACTGACAACAGGATTGTATTTAACTTTCAAGCTAACGTCTGTTGTTGAAAAGATTCAATCATTCGTTGCTGCATTTAAGGCCCTGTCACGGAAAGAAGTCCACTATGGATCATACGCCACATCAGAACAGGTAAATGCTGCGGGAGACCTCTGTGCTATTTGCCAGGAGAAGATGAATGCACCAATCCTGTTACGTTGTAAGCACATCTTCTGTGAAGATTGTGTTTCTGAATGGTTTGAAAGAGAAAGAACTTGCCCTCTTTGCCGGGCACTAGTAAAGCCTGCAGAACTTCGAACATTTGGCGATGGGTCAACCAGCTTACTCTTCCAGTTGTTTTAG | 1488 | 44.42 | METSASNSDPYSNSSSSSSSPTTARTSSRFGVSLPSLNFFRSPLSVILDYSGILPTRAVRHESEPVINGSATPDLRVFSQNQNHLMPTSSSSSSSSSSSSSPTATSSSSSSGSISSSGEVSIRIIGSGEQDPSPSGLLPNQEAGYEQNGGIPVSGDRPESPDEERVPLVSTASSSTQSGSSRVDGESGNGVEESVNRDSSYQRYDIQQVARWIEQILPFSLLLLIVFIRQHLEGFFIAIWISAVMYKSNDIVKKQTALKGERKISVLAGTSIAFLIHVVGIYWWCHSDDLLYPLVMLPPKTVPPFWHALFIILVNDTMVRQATMALKCFLLIYYKNGRGHNFRRQGQILTLVEYTLLLYRALLPTPVWYRFFLNKDQGSLFSSLTTGLYLTFKLTSVVEKIQSFVAAFKALSRKEVHYGSYATSEQVNAAGDLCAICQEKMNAPILLRCKHIFCEDCVSEWFERERTCPLCRALVKPAELRTFGDGSTSLLFQLF | 495 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 68078508 | 68086074 | - | Hsped.01g06260.1 | Hepe01g0626 | 559736 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Hepe01g0626 | 495 | CDD | RING-HC_RNFT1-like | 432 | 472 | - | - | |
Hepe01g0626 | 495 | MobiDBLite | consensus disorder prediction | 84 | 123 | - | - | |
Hepe01g0626 | 495 | MobiDBLite | consensus disorder prediction | 84 | 197 | - | - | |
Hepe01g0626 | 495 | PANTHER | UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN | 10 | 495 | IPR044235 | GO:0061630(PANTHER)|GO:0061630(InterPro)|GO:1904294(InterPro) | |
Hepe01g0626 | 495 | MobiDBLite | consensus disorder prediction | 1 | 29 | - | - | |
Hepe01g0626 | 495 | SMART | ring_2 | 434 | 471 | IPR001841 | - | |
Hepe01g0626 | 495 | ProSiteProfiles | Zinc finger RING-type profile. | 434 | 472 | IPR001841 | - | |
Hepe01g0626 | 495 | SUPERFAMILY | RING/U-box | 427 | 477 | - | - | |
Hepe01g0626 | 495 | MobiDBLite | consensus disorder prediction | 167 | 197 | - | - | |
Hepe01g0626 | 495 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 408 | 481 | IPR013083 | - | |
Hepe01g0626 | 495 | ProSitePatterns | Zinc finger RING-type signature. | 449 | 458 | IPR017907 | - | |
Hepe01g0626 | 495 | Pfam | Ring finger domain | 433 | 472 | IPR001841 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Hepe01g0626 | Hepe-Chr1:68078508 | Hepe04g0661 | Hepe-Chr4:60008552 | 1.15e-190 | dispersed | |
Hepe06g1524 | Hepe-Chr6:65926316 | Hepe01g0626 | Hepe-Chr1:68078508 | 3.19e-07 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Hepe01g0626 | - | - | - | 0.0 |