Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe01g0642 ATGTCCTCCGAAGACATGAACGCGCTCAACTCCCACCTCGTCTTCCCAGACGAAGCCATACCCTTCAATTGCGCCGCCACCCCGCACCGCCGCGTCGCCGACCCAGGTCCCAAAACCCGCGAACTCTGCGGTTTTTTGGATGACAAGCTCTTCCCTGTCGACCGAGACCGATTCTTCGCTCACCAGGGCGCCACCGATTTCCGCCGGAGTGTGTTCAGTGACAGCCGGAATTGGAATGGGAATGGGACTGCGAGAACTGGAAGTGGGAAAGGATCGGATGAGGATGATGATGATGATGATGAAGAGGAGGATGATGATGATGAAGTCGATGATGGCGATGATGATGTTGAAGGGCTTGTCTCTTTGGATGATGTTAATAAGTGCGGTAAAATTTCTAACCCCAACAACAGCAACAATGATAGAAGCGATCAGAGTAGTGGGGGTTTGAAGAATGGGATGAACAAATTGGGAAATGGGAAGCCTAAGCACCATTCTTCTTTTGGTGGAACTTTGTTGGTCAAGGATGGGATGGTTGGGCCTTCAGGGAGTAACACAGGAGCAAATCAGAGTGAGAGCCATTTGCAGGGAAGGTTGGGGAATTACCCAAATGCTGTTACAATTGCAGAAGTTGAAGGTGATGCTTATTATTCACAGTATTTGCAAGGCACTGAGGGGTCTGGTTCTGGGCAGAAGGATCAATTTGCTATGGAAAATGGATGTGGTTTTGGGAGAAGGGATGTTTCGGTTACGGGCGAGCCTGGAGAGTCTCTGAGAGCTATTCTCACAGACCCTGTGACGGGCGCTCTCATGGATGATGCGATGATATTACCATGTGGGCATTCCTTTGGGAGTGGTGGAATACAACATGTTCTTAGAGTAAAATCTTGTTACTCGTGTTCTCAGTCAATTTCTGAAGAGTCTATTGCTCCAAACTTATCTCTTCAAGCTGCAGTCCAAGCATTCCGCCGGGAAGAAGAATTATTATTTTACCGCTCACCAAAAAGGAGAAGGGAAAGATTTGAGCAGGACAAGGATGGTTATGGTGATTTGACTCTCATGGATACTCCAAGAGGTCGAGGCGTTCAGTTTCCTTTCGCAGTGACAGATCGGGTAATTATCAAGGGGAACAAGAGGACACCGCAGCGTTTTGTGGGACGTGAGGCTGTTGTTACAACACAGTGCTTGAATGGATGGTATGTGGTGAAAACACTAGACAACGCAGAGAGTGTAAAGTTGCAGTACCGCTCGCTTGCGAAGGTTCCGAACGACGCAGCATCAAAAACAATAATAAGGAAGATCGCACCGAATTGGCTTTAG 1317 48.29 MSSEDMNALNSHLVFPDEAIPFNCAATPHRRVADPGPKTRELCGFLDDKLFPVDRDRFFAHQGATDFRRSVFSDSRNWNGNGTARTGSGKGSDEDDDDDDEEEDDDDEVDDGDDDVEGLVSLDDVNKCGKISNPNNSNNDRSDQSSGGLKNGMNKLGNGKPKHHSSFGGTLLVKDGMVGPSGSNTGANQSESHLQGRLGNYPNAVTIAEVEGDAYYSQYLQGTEGSGSGQKDQFAMENGCGFGRRDVSVTGEPGESLRAILTDPVTGALMDDAMILPCGHSFGSGGIQHVLRVKSCYSCSQSISEESIAPNLSLQAAVQAFRREEELLFYRSPKRRRERFEQDKDGYGDLTLMDTPRGRGVQFPFAVTDRVIIKGNKRTPQRFVGREAVVTTQCLNGWYVVKTLDNAESVKLQYRSLAKVPNDAASKTIIRKIAPNWL 438
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 68330505 68335151 + Hsped.01g06420.1 Hepe01g0642 559752

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe01g0642 438 MobiDBLite consensus disorder prediction 72 197 - -
Hepe01g0642 438 ProSiteProfiles U-box domain profile. 256 328 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Hepe01g0642 438 MobiDBLite consensus disorder prediction 93 119 - -
Hepe01g0642 438 SUPERFAMILY RING/U-box 256 328 - -
Hepe01g0642 438 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 62-RELATED 12 424 - -
Hepe01g0642 438 MobiDBLite consensus disorder prediction 72 88 - -
Hepe01g0642 438 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 255 327 IPR013083 -
Hepe01g0642 438 MobiDBLite consensus disorder prediction 181 197 - -
Hepe01g0642 438 MobiDBLite consensus disorder prediction 128 152 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe01g0642 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g0360 Hepe-Chr1:53473717 Hepe01g0642 Hepe-Chr1:68330505 2.65e-43 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe08g2676 . 2 713 Plant U-box Gene Family AT5G57035 53.7 1.4e-229 793.1
Hepe01g0642 . 204 438 Plant U-box Gene Family AT5G05230 57.3 2.8e-68 256.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004883 1 1 1 1 1 1 2 1 1 2 1 1 2 2 2 0 1 2 1 1 2 1 1 1 1 1 1 2 4 1 40