Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe01g0656 ATGTCCAAAGAAAGAGAGAGATTCGACGAGATAGCGAAGAAGATAAAGAGGGAGATAGATGTATCATCGAATATTCCTTCACAACATATTATGGGGAGAAGACATACATTGCAGGGTCCTCCTGGGATGATTCTCAACACCATTACTCCATGTGCAGCCTGCAAGCTCTTAAGAAGAAGATGTGCTCAAGAATGCCCCTTCTCCCCATACTTCTCCCCCCACGAGCCCCACAAGTTCGCCTCCGTCCACAAGGTTTTCGGTGCTAGCAACGTCTCGAAGATGCTCATGGAAGTTCCGGAGAATCAGCGAGCCGATGCTTCGAACAGCCTAGTTTATGAAGCTAATGTGAGGCTAAGAGATCCTGTCTATGGCTGCATGGGTGCCATTTCAGCCCTACAACACCAAATCCAAGGCTTACAAGCTGAGCTCAACGTAGTGAGAGCTGAGATTTTAAGATACAAATATAGAGAAGCTAATATGATTCACTCTTCTCCTCAACAAGTACATGTGCCTTTTCTTTCTTCTTCGGCTGAGGTCGTTTCGATCGCCATCCCACCACCGCCGCCACCGCCTCCGCCGCTACCTCCACCGCCTCATAACGATGCTTCTTCTTCCTCCTCTTCCTTGTACAACCGGCCCACGGCGGCTGCTGATTATAATACTATTTCAAGTGATGAAAATGTAACCTACTTTGTTAGTACTTCTAGTGCGATCAATTGA 720 47.36 MSKERERFDEIAKKIKREIDVSSNIPSQHIMGRRHTLQGPPGMILNTITPCAACKLLRRRCAQECPFSPYFSPHEPHKFASVHKVFGASNVSKMLMEVPENQRADASNSLVYEANVRLRDPVYGCMGAISALQHQIQGLQAELNVVRAEILRYKYREANMIHSSPQQVHVPFLSSSAEVVSIAIPPPPPPPPPLPPPPHNDASSSSSSLYNRPTAAADYNTISSDENVTYFVSTSSAIN 239
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 68736318 68737852 - Hsped.01g06560.1 Hepe01g0656 559766
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe01g0656 239 ProSiteProfiles LOB domain profile. 49 150 IPR004883 -
Hepe01g0656 239 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 48 177 - -
Hepe01g0656 239 MobiDBLite consensus disorder prediction 181 211 - -
Hepe01g0656 239 Coils Coil 129 149 - -
Hepe01g0656 239 MobiDBLite consensus disorder prediction 182 200 - -
Hepe01g0656 239 Pfam Lateral organ boundaries (LOB) domain 50 147 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g0656 Hepe-Chr1:68736318 Hepe08g0630 Hepe-Chr8:5603072 9.63e-52 dispersed
Hepe01g0656 Hepe-Chr1:68736318 Hepe02g3287 Hepe-Chr2:82479948 1.02e-78 wgd
Hepe01g0656 Hepe-Chr1:68736318 Hepe08g2048 Hepe-Chr8:57459279 1.07e-42 wgd
Hepe01g0656 Hepe-Chr1:68736318 HepeContig66g0098 Hepe-ChrContig66:6830429 3.78e-40 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54771 PF03195 LOB 2.90E-40 No_clan Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe01g0656 - - - 0.0