Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe01g0659 ATGGTAGCTTCTAGCCTCGCTTGTTCTTCATCGCTATTTGCAGTGTTTCCACTTCAAAATAATGCGCTCTACAAATCTATATTACCATTTTCTTCAAATCTTTCAAAACCCCATTTCCGATTCAACAAAATTTGCTGCGGAATGCCTGAGAGTGGAATTCGGCAAAACCCCACAAGTTCCAAGAACAGGATGGAGGAGTACAATTTGGCTATGAAGAAGATGATGAGCAACCCCTATGAGTATCACCATGAATTGGGTATGAACTATACTGTGATAGCTGACAATTTGATTGTCGGTTCCCAGCCTCAAAAACCCGAAGATATCGATTTCTTGAAGGAGGAAGAAGATGTTGCCTATATTCTGAATTTACAGCAGGACAAGGATGTTGAGTACTGGGGAATCGACTTACAATCAATTATAGAAAGATGTAAAGAACTTGGAATTCATCATATGAGGCGACCGGCAAAAGATTTTGATCCAGATTCCTTGAGAAACGGATTGCCTAAAGCTGTTTCCTTGTTAGAATGGGCGATTTCAGAGGGTAAAGGAAAAGTTTACGTGCATTGCACTGCTGGACTCGGAAGGGCCCCCGCTGTTGCAATAGCTTACCTGTACTGGTTTTGTGGAATGAATTTAAATACAGCATATGAAGCACTGACTTCAAAAAGACCTTGTGGACCGAGTAAAAGAGCAATCCAGGGAGCCACTTACGATCTATCTAAAAATGATCCAGGGAAGGAACCATTTGAGAGCCTTTCAGATAATGCATTCGAAGATATTGCAGATTGGGAAAGAAACTTGATTCAGGATCGGATCCGTTCTCTTCGTTCAACTTGA 837 41.34 MVASSLACSSSLFAVFPLQNNALYKSILPFSSNLSKPHFRFNKICCGMPESGIRQNPTSSKNRMEEYNLAMKKMMSNPYEYHHELGMNYTVIADNLIVGSQPQKPEDIDFLKEEEDVAYILNLQQDKDVEYWGIDLQSIIERCKELGIHHMRRPAKDFDPDSLRNGLPKAVSLLEWAISEGKGKVYVHCTAGLGRAPAVAIAYLYWFCGMNLNTAYEALTSKRPCGPSKRAIQGATYDLSKNDPGKEPFESLSDNAFEDIADWERNLIQDRIRSLRST 278
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 68774563 68778107 + Hsped.01g06590.1 Hepe01g0659 559769

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe01g0659 278 SMART dsp_5 88 242 IPR020422 GO:0006470(InterPro)
Hepe01g0659 278 Pfam Dual specificity phosphatase, catalytic domain 112 225 IPR000340 GO:0016311(InterPro)
Hepe01g0659 278 CDD DSP_laforin-like 87 234 IPR045204 GO:0019203(InterPro)
Hepe01g0659 278 FunFam Phosphoglucan phosphatase LSF2, chloroplastic 71 278 - -
Hepe01g0659 278 Gene3D Protein tyrosine phosphatase superfamily 71 278 IPR029021 -
Hepe01g0659 278 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 79 228 IPR029021 -
Hepe01g0659 278 ProSiteProfiles Dual specificity protein phosphatase domain profile. 88 245 IPR020422 GO:0006470(InterPro)
Hepe01g0659 278 PANTHER DUAL SPECIFICITY PHOSPHATASE, SUBGROUP, CATALYTIC DOMAIN 57 247 IPR052832 GO:0005983(PANTHER)|GO:0009507(PANTHER)|GO:0019203(PANTHER)|GO:0046838(PANTHER)|GO:2001070(PANTHER)
Hepe01g0659 278 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 165 224 IPR000387 GO:0016311(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe01g0659 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g0659 Hepe-Chr1:68774563 Hepe01g1069 Hepe-Chr1:75447376 3.94e-43 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe04g1268 . 33 601 Protein tyrosine phosphatase (PTP) family AT3G50110 61.6 1.7e-190 662.9
Hepe02g0602 . 6 616 Protein tyrosine phosphatase (PTP) family AT3G50110 55.2 1.5e-178 623.2
Hepe02g2078 . 1 415 Protein tyrosine phosphatase (PTP) family AT5G39400 64.2 1.3e-151 533.1
Hepe02g2902 . 1 862 Protein tyrosine phosphatase (PTP) family AT3G10550 67.5 0.0e+00 1165.6
Hepe02g2902 . 1 862 Protein tyrosine phosphatase (PTP) family AT5G04540 65.8 0.0e+00 1112.8
Hepe09g0582 . 1 1206 Protein tyrosine phosphatase (PTP) family AT5G58160 54.1 5.5e-313 1070.8
Hepe08g1059 . 56 321 Protein tyrosine phosphatase (PTP) family AT5G58160 64.6 1.9e-92 338.2
Hepe01g0559 . 79 386 Protein tyrosine phosphatase (PTP) family AT1G71860 66.5 6.6e-120 427.6
Hepe09g0013 . 1 864 Protein tyrosine phosphatase (PTP) family AT5G23720 62.8 5.1e-300 1027.3
Hepe03g0164 . 97 236 Protein tyrosine phosphatase (PTP) family AT3G06110 51.1 1.2e-37 153.3
Hepe02g0068 . 1 166 Protein tyrosine phosphatase (PTP) family AT2G04550 76.9 3.0e-71 265.0
Hepe01g1069 . 92 372 Protein tyrosine phosphatase (PTP) family AT3G52180 68.3 1.1e-112 403.3
Hepe01g0659 . 4 278 Protein tyrosine phosphatase (PTP) family AT3G10940 65.8 5.3e-107 384.4
Hepe02g1823 . 14 462 Protein tyrosine phosphatase (PTP) family AT3G01510 73.7 1.9e-204 708.8
Hepe08g0587 . 10 210 Protein tyrosine phosphatase (PTP) family AT2G32960 59.7 7.0e-74 274.2
Hepe02g0073 . 6 233 Protein tyrosine phosphatase (PTP) family AT2G32960 59.6 3.0e-72 268.9
Hepe09g1309 . 14 170 Protein tyrosine phosphatase (PTP) family AT2G32960 50.8 4.4e-52 201.8
Hepe06g1113 . 1 333 Protein tyrosine phosphatase (PTP) family AT2G35680 56.3 6.1e-102 367.9
Hepe08g2635 . 10 229 Protein tyrosine phosphatase (PTP) family AT2G35680 60.1 1.9e-79 293.1
Hepe08g2635 . 27 216 Protein tyrosine phosphatase (PTP) family AT5G56610 51.0 7.7e-46 180.6
Hepe08g0587 . 43 211 Protein tyrosine phosphatase (PTP) family AT4G03960 76.9 3.4e-76 281.6
Hepe02g0073 . 36 234 Protein tyrosine phosphatase (PTP) family AT4G03960 63.3 1.1e-69 260.0
Hepe09g1309 . 12 170 Protein tyrosine phosphatase (PTP) family AT4G03960 59.7 6.7e-56 214.2
Hepe09g1309 . 1 196 Protein tyrosine phosphatase (PTP) family AT3G02800 69.0 7.5e-79 290.4
Hepe08g0587 . 40 206 Protein tyrosine phosphatase (PTP) family AT3G02800 59.9 7.5e-55 210.7
Hepe01g0838 . 1 184 Protein tyrosine phosphatase (PTP) family AT3G55270 66.0 2.2e-62 237.7
Hepe02g2078 . 1 415 Protein tyrosine phosphatase (PTP) family AT5G39400 64.2 1.3e-151 533.1
Hepe02g0602 . 6 616 Protein tyrosine phosphatase (PTP) family AT3G19420 63.4 1.4e-216 749.6
Hepe04g1268 . 31 601 Protein tyrosine phosphatase (PTP) family AT3G19420 61.7 5.7e-199 691.0
Hepe04g1268 . 33 601 Protein tyrosine phosphatase (PTP) family AT3G50110 61.6 1.7e-190 662.9
Hepe02g0602 . 6 616 Protein tyrosine phosphatase (PTP) family AT3G50110 55.2 1.5e-178 623.2
Hepe09g0582 . 1 1206 Protein tyrosine phosphatase (PTP) family AT5G58160 54.1 5.5e-313 1070.8
Hepe08g1059 . 56 321 Protein tyrosine phosphatase (PTP) family AT5G58160 64.6 1.9e-92 338.2
Hepe02g2902 . 1 862 Protein tyrosine phosphatase (PTP) family AT3G10550 67.5 0.0e+00 1165.6
Hepe02g2902 . 1 862 Protein tyrosine phosphatase (PTP) family AT5G04540 65.8 0.0e+00 1112.8
Hepe08g0239 . 62 244 Protein tyrosine phosphatase (PTP) family AT3G44620 65.2 1.7e-67 253.1
Hepe06g1037 . 23 319 Protein tyrosine phosphatase (PTP) family AT2G35320 61.3 2.3e-108 389.0
Hepe04g0778 . 1 672 Protein tyrosine phosphatase (PTP) family AT3G09100 69.0 6.1e-279 956.8
Hepe04g0778 . 5 672 Protein tyrosine phosphatase (PTP) family AT5G01290 65.8 1.1e-253 872.8
Hepe04g0778 . 86 672 Protein tyrosine phosphatase (PTP) family AT5G28210 55.5 1.4e-181 633.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012743 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 2 1 28