Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe01g0681 ATGGCTTCTCACACCCCCAACCTCGAGTGTCGGATGTACGAATCCAGGTACCCCGAGGTCGACATGGCCGTCATGATCCAGGTCAAGAACATCGCAGACATGGGCGCCTATGTCTCTCTTCTCGAGTACAACAACATTGAAGGCATGATACTATTTTCCGAGCTCTCTCGCCGTCGTATTCGGAGTGTCAGCAGCTTAATTAAGGTCGGCCGAATCGAGCCCGTCATGGTCCTCAGGGTCGATAAGGAGAAGGGCTATATTGATTTGAGTAAGAGGAGGGTTTCTGAGGAGGATATTCAGACTTGTGAGGAGAGGTATAACAAGAGCAAGCTTGTTCACTCTATTATGCGCCATGTTGCTGAGACTATGAACATTGATTTGGAGGACTTGTATATCCATGTTGGGTGGCCTTTGTACCGGAAATATGGTCATGCTTTTGAGGCATTCAAGATTATTGTAAATGATCCTGATTCGGTGTTGAGCTCTCTCACCCGTGAAGTCAAGGAAGCTGGTCCTGATGGACAGGAGGTAACCAAGGTAGTTCCCGCAATGTCTGAGGATGTAAAAGATTCTTTAATAAAGAATATTAAAAGAAGAATGACTCCCCAGCCAATGAAGGTTCGGGCTGATATTGAGATGAAGTGTTTCCAGTTTGACGGTGTTCTTCACATCAAGGAAGCAATGCGGAGAGCTGAAGCTGCTGGAAATGATGATTGTCCTGTTAAAATTAAGTTGGTTGCTCCTCCACTCTATGTCCTTACTACCCAGACACTTGACAAGGAGCAAGGAATCAGTGTTCTTGAAAAAGCAATCACTGCTTGCACCGAAGCAATTGAGCATCACAAAGGAAAGCTTGTAGTGAAGGAGGCACCTAGGGCGGTGAGTGAAAGAGACGACAAATTACTTGCCGAGCACATGGCGAAGCTACGACAGGACAATGAAGAAATTAGCGGAGATGAGGGTAGCGAGGAAGAGGAGGACACGGGAATGGGAGACGTCGATGTCGAGAATCTATAG 1017 46.8 MASHTPNLECRMYESRYPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSELSRRRIRSVSSLIKVGRIEPVMVLRVDKEKGYIDLSKRRVSEEDIQTCEERYNKSKLVHSIMRHVAETMNIDLEDLYIHVGWPLYRKYGHAFEAFKIIVNDPDSVLSSLTREVKEAGPDGQEVTKVVPAMSEDVKDSLIKNIKRRMTPQPMKVRADIEMKCFQFDGVLHIKEAMRRAEAAGNDDCPVKIKLVAPPLYVLTTQTLDKEQGISVLEKAITACTEAIEHHKGKLVVKEAPRAVSERDDKLLAEHMAKLRQDNEEISGDEGSEEEEDTGMGDVDVENL 338
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 69107113 69111928 + Hsped.01g06810.1 Hepe01g0681 559791
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe01g0681 338 ProSiteProfiles S1 domain profile. 21 92 IPR003029 GO:0003676(InterPro)
Hepe01g0681 338 SMART S1_6 19 92 IPR003029 GO:0003676(InterPro)
Hepe01g0681 338 FunFam Eukaryotic translation initiation factor 2 subunit 1 205 327 - -
Hepe01g0681 338 FunFam Eukaryotic translation initiation factor 2 subunit alpha 95 199 - -
Hepe01g0681 338 Pfam S1 RNA binding domain 18 92 IPR003029 GO:0003676(InterPro)
Hepe01g0681 338 SUPERFAMILY eIF-2-alpha, C-terminal domain 203 319 IPR024055 -
Hepe01g0681 338 Gene3D EIF_2_alpha 205 327 IPR024055 -
Hepe01g0681 338 SUPERFAMILY Nucleic acid-binding proteins 13 92 IPR012340 -
Hepe01g0681 338 MobiDBLite consensus disorder prediction 317 338 - -
Hepe01g0681 338 FunFam Eukaryotic translation initiation factor 2 subunit alpha 7 94 - -
Hepe01g0681 338 Gene3D Translation initiation factor 2; subunit 1; domain 2 95 199 IPR024054 -
Hepe01g0681 338 Gene3D - 6 94 IPR012340 -
Hepe01g0681 338 Pfam Eukaryotic translation initiation factor 2 alpha subunit 130 260 IPR011488 GO:0003723(InterPro)|GO:0003743(InterPro)
Hepe01g0681 338 MobiDBLite consensus disorder prediction 308 338 - -
Hepe01g0681 338 CDD S1_IF2_alpha 18 93 IPR044126 GO:0003723(InterPro)
Hepe01g0681 338 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 1 6 333 IPR011488 GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0003743(PANTHER)|GO:0005850(PANTHER)|GO:0006413(PANTHER)|GO:0033290(PANTHER)|GO:0043022(PANTHER)
Hepe01g0681 338 SUPERFAMILY eIF2alpha middle domain-like 94 199 IPR024054 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g0681 Hepe-Chr1:69107113 Hepe05g1179 Hepe-Chr5:57487582 6.09e-211 dispersed
Hepe01g0681 Hepe-Chr1:69107113 Hepe01g0690 Hepe-Chr1:69263991 5.36e-234 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe01g0681 K03237 - csv:101209681 615.15