Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe01g0685 ATGGGTGGCAATTCGCCGTGCGCCTCGTGCAAACTCCTCCGCCGGCGGTGCGCCAAAGACTGCATTTTTGCCCCTTTTTTCCCCTCCGATGACCCCCACAAGTTTGCTATTGTTCATAAGGTTTTTGGTGCTAGCAATGTCAGCAAAATGTTGCAGGAACTGCCAGTGCAACAAAGAGGCGACGCCGTGATGAGCTTAGTTTATGAGGCAGGTGCAAGAGTGAGGGACCCAGTTTATGGTTGTGTAGGGGCAATTTCGTACTTACAAAATCAAGTCTCACAGCTACAAATGCAATTGGCTGTGGCTCAAGCTGAGATACTTTGCATCCAAATGCAACAAGACCACACCGTTTTCCCAAATTACCCTCAGATCCTCTCCGACGAGAAACCGCCGTCTTTTCTACTCCCGCCGCCGTCTCCGCCGCCCTCTCAGTGCCTCAATTTCGCTTCTTCTCCCAATGACAACCGTGTTTCATGTGCCAAAATTGTCTACATTCCCAACAACCTTTCTTCTACATGA 519 49.9 MGGNSPCASCKLLRRRCAKDCIFAPFFPSDDPHKFAIVHKVFGASNVSKMLQELPVQQRGDAVMSLVYEAGARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQDHTVFPNYPQILSDEKPPSFLLPPPSPPPSQCLNFASSPNDNRVSCAKIVYIPNNLSST 172
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 69160164 69165762 - Hsped.01g06850.1 Hepe01g0685 559795
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe01g0685 172 Coils Coil 85 105 - -
Hepe01g0685 172 Pfam Lateral organ boundaries (LOB) domain 6 103 IPR004883 -
Hepe01g0685 172 ProSiteProfiles LOB domain profile. 5 106 IPR004883 -
Hepe01g0685 172 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 4 128 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g0685 Hepe-Chr1:69160164 Hepe08g0630 Hepe-Chr8:5603072 3.01e-56 dispersed
Hepe01g0685 Hepe-Chr1:69160164 Hepe02g3306 Hepe-Chr2:82641826 1.04e-40 wgd
Hepe01g0685 Hepe-Chr1:69160164 Hepe08g0703 Hepe-Chr8:6338705 3.43e-61 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54773 PF03195 LOB 4.10E-41 No_clan Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe01g0685 - - - 0.0