Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe01g0714 ATGGCTTCAATCTCTTCCAGCCCTCGCACCGTCGAAGAAATCTTCAAGGATTACAGCGCTCGACGCGCAGGCCTTGTTCGCGCCCTCACTTATGATGTCGATGAGTTCTACTCGCTTTGCGATCCTGAGAAGGAGAATTTGTGTTTGTACGGACATCCCAATGAGTCTTGGGAGGTCACTCTGCCTGCCGAGGAAGTTCCATCTGAGCTCCCTGAGCCTGCGTTGGGGATCAATTTTGCTAGAGATGGGATGAAGCGCAGAGACTGGCTTTCGTTGGTTGCTGTACACAGCGATTGTTGGTTGCTTTCAGTGGCATTCTACTTTGGTGCTCGACTCAACCGCAATGAGCGGAAGCGACTATTTAGTATGATTAATGATCTACCCACTCTATTTGAAGTCGCATCTGGAAGGAAAGCTGTTAAAGACAAACCCAGCATGGATAGTGGAAGTAAATCCAGAAACAGCACAAAGCAACCAATTTTATCTTTGCAGAGGTCACTAGATGGGTCGATTAGAAGCAGCAATCCGAAGCTAATCGATGAGAGTTTTGGAGAGGAGGAAGATGAGCACGGTGATACTCTCTGTGGGAGCTGTGGAGGGAACTACAACGCAGATGAGTTTTGGATTGGATGTGACATCTGTGAGAGGTGGTTCCATGGAAAATGTGTGAGGATAACACCTACCAAGGCCGAAAGTATCAAGCAGTACAAATGCCCCTCTTGCAGCACAAAGAAAGGAAGACCGTAG 747 48.06 MASISSSPRTVEEIFKDYSARRAGLVRALTYDVDEFYSLCDPEKENLCLYGHPNESWEVTLPAEEVPSELPEPALGINFARDGMKRRDWLSLVAVHSDCWLLSVAFYFGARLNRNERKRLFSMINDLPTLFEVASGRKAVKDKPSMDSGSKSRNSTKQPILSLQRSLDGSIRSSNPKLIDESFGEEEDEHGDTLCGSCGGNYNADEFWIGCDICERWFHGKCVRITPTKAESIKQYKCPSCSTKKGRP 248
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 69827679 69842719 - Hsped.01g07140.1 Hepe01g0714 559824
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe01g0714 248 FunFam PHD finger alfin-like protein 187 243 - -
Hepe01g0714 248 Pfam Alfin 10 134 IPR021998 GO:0006355(InterPro)|GO:0042393(InterPro)
Hepe01g0714 248 PANTHER CPG BINDING PROTEIN 7 247 IPR045104 GO:0000976(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0042393(InterPro)
Hepe01g0714 248 SMART PHD_3 194 242 IPR001965 -
Hepe01g0714 248 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 184 243 IPR013083 -
Hepe01g0714 248 ProSiteProfiles Zinc finger PHD-type profile. 192 244 IPR019787 -
Hepe01g0714 248 Pfam PHD-finger 195 241 IPR019787 -
Hepe01g0714 248 ProSitePatterns Zinc finger PHD-type signature. 195 241 IPR019786 -
Hepe01g0714 248 CDD PHD_AL_plant 194 244 IPR044104 -
Hepe01g0714 248 SUPERFAMILY FYVE/PHD zinc finger 184 246 IPR011011 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g0714 Hepe-Chr1:69827679 Hepe08g1423 Hepe-Chr8:16817032 2.59e-111 dispersed
Hepe01g0714 Hepe-Chr1:69827679 Hepe05g0086 Hepe-Chr5:951169 1.38e-135 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54776 PF12165 Alfin 5.30E-68 No_clan Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe01g0714 K26274 - csv:101211934 473.781