Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe01g0778 ATGACAGGGCTTACCTCTTCTTCTTCATCCTCTTCTTGTGGTGCCTGCAAGTTTCTTAGGCGAAAATGTAGTATTCAATGTATTTTTGCTCCTTTCTTCAGCTATGATGAAGGCACTTCCCATTTTGCAGCTGTTCATAAAGTGTTTGGTGCTAGTAATGTCTCTAAGCTTCTCTTACACCTCCCCATGCACATCCGAAGCCATGCTGCGATCACCGTCGCTTATGAAGCTCTCGAGCGAATGCGAGATCCAACCTATGGTTGCGTTGCGCATATCTTCTCGTTGCAGCAAGAGGTCGCAAGCTTGCAAGAGGAGATTGAAATTCTGGGGAGTCAAATAGCGAACTTCGCCAAGACCGGTAGCGTTGCGGCGGTCGAGAATCCGTTTAGAGAGCTTCAAGTCTCACAGCAGCTGGATGATTTTGGGATGAACACAAATGATTATCAAAATGAATTGCTTTCTCATGAGTTACCCCACCAAACTTTTGATCATGGCCAAAATGATAATAATGCTCAAATGATATCTCCATTGTTTTGTTTAGGGGAAGAAGAAGATGGATTTTTTGGGTGCAACCCAATAAATAATGTTGTGGAGAGATCAGCATTTGATGTTTCAATTGAAGAGGCTTTTGCTTGTTATCCATGGTAG 648 43.21 MTGLTSSSSSSSCGACKFLRRKCSIQCIFAPFFSYDEGTSHFAAVHKVFGASNVSKLLLHLPMHIRSHAAITVAYEALERMRDPTYGCVAHIFSLQQEVASLQEEIEILGSQIANFAKTGSVAAVENPFRELQVSQQLDDFGMNTNDYQNELLSHELPHQTFDHGQNDNNAQMISPLFCLGEEEDGFFGCNPINNVVERSAFDVSIEEAFACYPW 215
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 71310361 71311575 - Hsped.01g07780.1 Hepe01g0778 559888
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe01g0778 215 Coils Coil 92 112 - -
Hepe01g0778 215 PANTHER LOB DOMAIN CONTAINING PROTEIN 10 147 - GO:0005634(PANTHER)|GO:0009755(PANTHER)|GO:0045893(PANTHER)
Hepe01g0778 215 ProSiteProfiles LOB domain profile. 11 113 IPR004883 -
Hepe01g0778 215 Pfam Lateral organ boundaries (LOB) domain 12 108 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g0778 Hepe-Chr1:71310361 Hepe03g0462 Hepe-Chr3:7030470 7.90e-45 dispersed
Hepe01g0778 Hepe-Chr1:71310361 Hepe05g1877 Hepe-Chr5:69076213 3.64e-42 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54779 PF03195 LOB 2.60E-32 No_clan Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe01g0778 K13945 - csv:101204875 328.176