Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe01g0800 ATGGCAGATTCTGAGGATATTCAGCCACTCGTCTGTGATAATGGAACGGGAATGGTTAAGGCTGGGTTTGCTGGAGATGATGCTCCAAGAGCTGTGTTTCCCAGTATTGTAGGCCGTCCTCGCCACACTGGTGTGATGGTTGGCATGGGTCAGAAAGATGCTTATGTTGGTGATGAGGCTCAATCCAAGCGTGGTATTTTGACTTTGAAATATCCCATTGAGCATGGTATTGTTAGCAACTGGGACGACATGGAAAAGATTTGGCATCATACTTTCTATAATGAGCTTCGTGTTGCCCCCGAGGAGCACCCGGTTCTCCTCACCGAGGCTCCTCTTAACCCGAAGGCCAATCGTGAGAAGATGACACAAATCATGTTTGAGACTTTCAATACTCCAGCTATGTATGTTGCCATTCAAGCTGTTCTGTCCTTGTATGCAAGTGGTCGTACAACTGGTATTGTGATGGACTCTGGTGATGGTGTCAGTCATACCGTTCCTATATACGAAGGTTATGCCCTTCCACACGCCATCCTTCGTCTTGACTTGGCAGGCCGCGATCTCACGGATAACCTGATGAAAATCCTCACCGAGCGTGGATACTCTTTCACCACAACTGCTGAGCGAGAAATTGTGAGAGATATGAAAGAAAAGCTGTCATATATTGCCCTTGATTTTGAACAAGAGATGGAGACATCCAAGACCAGCTCATCTGTCGAAAAGAGCTACGAATTGCCCGATGGACAGGTGATCACCATCGGCGCAGAGAGATTCAGATGTCCCGAAGTTCTTTTCCAACCTTCCATGATAGGGATGGAAGCAGCAGGTATTCATGAGACTACATACAACTCTATCATGAAGTGTGATGTGGATATCAGGAAGGACCTGTATGGCAACATTGTCCTATCTGGTGGTTCGACCATGTTCACCGGCATCGCTGATAGAATGAGCAAGGAAATCTCCGCCCTCGCCCCTAGCAGCATGAAGATAAAGGTCGTGGCGCCACCGGAGAGGAAGTATAGTGTCTGGATTGGAGGATCCATCTTGGCATCCCTTAGCACCTTCCAACAGGTTGTTCTTCTATACACGATGCTCTCATTTACAAACCAAACTTGCCAATTACTAGTAGATAAGAATTTTGATAACACAAACTTTTACCCTTTTTGA 1164 46.48 MADSEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDNLMKILTERGYSFTTTAEREIVRDMKEKLSYIALDFEQEMETSKTSSSVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFTGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQVVLLYTMLSFTNQTCQLLVDKNFDNTNFYPF 387
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 71842897 71845367 + Hsped.01g08000.1 Hepe01g0800 559910
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe01g0800 387 Gene3D - 140 340 - -
Hepe01g0800 387 FunFam Actin, alpha skeletal muscle 3 178 - -
Hepe01g0800 387 FunFam Major actin 260 340 - -
Hepe01g0800 387 CDD NBD_sugar-kinase_HSP70_actin 10 183 - -
Hepe01g0800 387 Gene3D - 10 358 - -
Hepe01g0800 387 ProSitePatterns Actins signature 1. 55 65 IPR004001 -
Hepe01g0800 387 SUPERFAMILY Actin-like ATPase domain 149 357 IPR043129 -
Hepe01g0800 387 Pfam Actin 5 358 IPR004000 -
Hepe01g0800 387 PANTHER ACTIN 8 354 IPR004000 GO:0005737(PANTHER)
Hepe01g0800 387 PRINTS Actin signature 63 85 IPR004000 -
Hepe01g0800 387 PRINTS Actin signature 238 254 IPR004000 -
Hepe01g0800 387 PRINTS Actin signature 51 62 IPR004000 -
Hepe01g0800 387 PRINTS Actin signature 117 130 IPR004000 -
Hepe01g0800 387 PRINTS Actin signature 28 37 IPR004000 -
Hepe01g0800 387 PRINTS Actin signature 142 161 IPR004000 -
Hepe01g0800 387 SMART actin_3 7 372 IPR004000 -
Hepe01g0800 387 FunFam Actin, muscle 182 273 - -
Hepe01g0800 387 ProSitePatterns Actins and actin-related proteins signature. 106 118 IPR020902 -
Hepe01g0800 387 Gene3D Actin; Chain A, domain 4 182 273 - -
Hepe01g0800 387 SUPERFAMILY Actin-like ATPase domain 6 154 IPR043129 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g0800 Hepe-Chr1:71842897 Hepe04g0855 Hepe-Chr4:62818130 5.22e-255 dispersed
Hepe01g0800 Hepe-Chr1:71842897 Hepe01g0302 Hepe-Chr1:45277193 2.94e-97 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe01g0800 K10355 - csv:101214247 702.59