Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe01g0800 ATGGCAGATTCTGAGGATATTCAGCCACTCGTCTGTGATAATGGAACGGGAATGGTTAAGGCTGGGTTTGCTGGAGATGATGCTCCAAGAGCTGTGTTTCCCAGTATTGTAGGCCGTCCTCGCCACACTGGTGTGATGGTTGGCATGGGTCAGAAAGATGCTTATGTTGGTGATGAGGCTCAATCCAAGCGTGGTATTTTGACTTTGAAATATCCCATTGAGCATGGTATTGTTAGCAACTGGGACGACATGGAAAAGATTTGGCATCATACTTTCTATAATGAGCTTCGTGTTGCCCCCGAGGAGCACCCGGTTCTCCTCACCGAGGCTCCTCTTAACCCGAAGGCCAATCGTGAGAAGATGACACAAATCATGTTTGAGACTTTCAATACTCCAGCTATGTATGTTGCCATTCAAGCTGTTCTGTCCTTGTATGCAAGTGGTCGTACAACTGGTATTGTGATGGACTCTGGTGATGGTGTCAGTCATACCGTTCCTATATACGAAGGTTATGCCCTTCCACACGCCATCCTTCGTCTTGACTTGGCAGGCCGCGATCTCACGGATAACCTGATGAAAATCCTCACCGAGCGTGGATACTCTTTCACCACAACTGCTGAGCGAGAAATTGTGAGAGATATGAAAGAAAAGCTGTCATATATTGCCCTTGATTTTGAACAAGAGATGGAGACATCCAAGACCAGCTCATCTGTCGAAAAGAGCTACGAATTGCCCGATGGACAGGTGATCACCATCGGCGCAGAGAGATTCAGATGTCCCGAAGTTCTTTTCCAACCTTCCATGATAGGGATGGAAGCAGCAGGTATTCATGAGACTACATACAACTCTATCATGAAGTGTGATGTGGATATCAGGAAGGACCTGTATGGCAACATTGTCCTATCTGGTGGTTCGACCATGTTCACCGGCATCGCTGATAGAATGAGCAAGGAAATCTCCGCCCTCGCCCCTAGCAGCATGAAGATAAAGGTCGTGGCGCCACCGGAGAGGAAGTATAGTGTCTGGATTGGAGGATCCATCTTGGCATCCCTTAGCACCTTCCAACAGGTTGTTCTTCTATACACGATGCTCTCATTTACAAACCAAACTTGCCAATTACTAGTAGATAAGAATTTTGATAACACAAACTTTTACCCTTTTTGA 1164 46.48 MADSEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDNLMKILTERGYSFTTTAEREIVRDMKEKLSYIALDFEQEMETSKTSSSVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFTGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQVVLLYTMLSFTNQTCQLLVDKNFDNTNFYPF 387
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 71842897 71845367 + Hsped.01g08000.1 Hepe01g0800 559910

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe01g0800 387 Gene3D - 140 340 - -
Hepe01g0800 387 FunFam Actin, alpha skeletal muscle 3 178 - -
Hepe01g0800 387 FunFam Major actin 260 340 - -
Hepe01g0800 387 CDD NBD_sugar-kinase_HSP70_actin 10 183 - -
Hepe01g0800 387 Gene3D - 10 358 - -
Hepe01g0800 387 ProSitePatterns Actins signature 1. 55 65 IPR004001 -
Hepe01g0800 387 SUPERFAMILY Actin-like ATPase domain 149 357 IPR043129 -
Hepe01g0800 387 Pfam Actin 5 358 IPR004000 -
Hepe01g0800 387 PANTHER ACTIN 8 354 IPR004000 GO:0005737(PANTHER)
Hepe01g0800 387 PRINTS Actin signature 63 85 IPR004000 -
Hepe01g0800 387 PRINTS Actin signature 238 254 IPR004000 -
Hepe01g0800 387 PRINTS Actin signature 51 62 IPR004000 -
Hepe01g0800 387 PRINTS Actin signature 117 130 IPR004000 -
Hepe01g0800 387 PRINTS Actin signature 28 37 IPR004000 -
Hepe01g0800 387 PRINTS Actin signature 142 161 IPR004000 -
Hepe01g0800 387 SMART actin_3 7 372 IPR004000 -
Hepe01g0800 387 FunFam Actin, muscle 182 273 - -
Hepe01g0800 387 ProSitePatterns Actins and actin-related proteins signature. 106 118 IPR020902 -
Hepe01g0800 387 Gene3D Actin; Chain A, domain 4 182 273 - -
Hepe01g0800 387 SUPERFAMILY Actin-like ATPase domain 6 154 IPR043129 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe01g0800 K10355 - - csv:101214247 702.59
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g0800 Hepe-Chr1:71842897 Hepe04g0855 Hepe-Chr4:62818130 5.22e-255 dispersed
Hepe01g0800 Hepe-Chr1:71842897 Hepe01g0302 Hepe-Chr1:45277193 2.94e-97 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe04g1131 . 1 377 Cytoskeleton Gene Families AT2G37620 95.5 2.5e-213 738.0
Hepe04g0855 . 1 377 Cytoskeleton Gene Families AT2G37620 96.0 3.3e-213 737.6
Hepe08g1258 . 1 377 Cytoskeleton Gene Families AT2G37620 95.2 5.6e-213 736.9
Hepe02g0785 . 1 377 Cytoskeleton Gene Families AT2G37620 93.9 4.7e-212 733.8
Hepe01g0800 . 1 357 Cytoskeleton Gene Families AT2G37620 94.7 1.1e-197 686.0
Hepe05g0523 . 87 275 Cytoskeleton Gene Families AT2G37620 97.4 2.1e-106 382.9
Hepe01g0302 . 2 177 Cytoskeleton Gene Families AT2G37620 92.6 1.7e-92 336.7
Hepe04g0054 . 1 110 Cytoskeleton Gene Families AT2G37620 94.5 2.5e-56 216.5
Hepe06g0319 . 1 107 Cytoskeleton Gene Families AT2G37620 92.5 5.9e-53 205.3
Hepe04g0855 . 1 377 Cytoskeleton Gene Families AT5G59370 96.3 1.2e-212 735.7
Hepe08g1258 . 1 377 Cytoskeleton Gene Families AT5G59370 94.7 1.5e-210 728.8
Hepe04g1131 . 1 377 Cytoskeleton Gene Families AT5G59370 94.4 3.4e-210 727.6
Hepe02g0785 . 1 377 Cytoskeleton Gene Families AT5G59370 93.4 1.7e-209 725.3
Hepe01g0800 . 1 357 Cytoskeleton Gene Families AT5G59370 96.4 5.4e-200 693.7
Hepe05g0523 . 87 275 Cytoskeleton Gene Families AT5G59370 98.4 4.1e-107 385.2
Hepe01g0302 . 2 177 Cytoskeleton Gene Families AT5G59370 90.3 6.0e-90 328.2
Hepe04g0054 . 1 110 Cytoskeleton Gene Families AT5G59370 92.7 2.8e-55 213.0
Hepe06g0319 . 1 107 Cytoskeleton Gene Families AT5G59370 90.7 6.5e-52 201.8
Hepe04g0855 . 1 377 Cytoskeleton Gene Families AT3G46520 96.6 5.6e-213 736.9
Hepe08g1258 . 1 377 Cytoskeleton Gene Families AT3G46520 95.0 6.9e-211 729.9
Hepe04g1131 . 1 377 Cytoskeleton Gene Families AT3G46520 94.7 1.5e-210 728.8
Hepe02g0785 . 1 377 Cytoskeleton Gene Families AT3G46520 93.6 7.6e-210 726.5
Hepe01g0800 . 1 357 Cytoskeleton Gene Families AT3G46520 96.1 1.6e-199 692.2
Hepe05g0523 . 87 275 Cytoskeleton Gene Families AT3G46520 98.4 4.1e-107 385.2
Hepe01g0302 . 2 177 Cytoskeleton Gene Families AT3G46520 90.9 2.7e-90 329.3
Hepe04g0054 . 1 110 Cytoskeleton Gene Families AT3G46520 92.7 2.8e-55 213.0
Hepe06g0319 . 1 107 Cytoskeleton Gene Families AT3G46520 90.7 6.5e-52 201.8
Hepe04g0855 . 1 377 Cytoskeleton Gene Families AT3G12110 96.0 7.3e-213 736.5
Hepe04g1131 . 1 377 Cytoskeleton Gene Families AT3G12110 95.5 9.6e-213 736.1
Hepe08g1258 . 1 377 Cytoskeleton Gene Families AT3G12110 95.2 2.1e-212 734.9
Hepe02g0785 . 1 377 Cytoskeleton Gene Families AT3G12110 94.7 3.6e-212 734.2
Hepe01g0800 . 1 357 Cytoskeleton Gene Families AT3G12110 95.5 4.6e-199 690.6
Hepe05g0523 . 87 275 Cytoskeleton Gene Families AT3G12110 98.9 1.9e-107 386.3
Hepe01g0302 . 2 177 Cytoskeleton Gene Families AT3G12110 92.0 3.8e-92 335.5
Hepe04g0054 . 1 110 Cytoskeleton Gene Families AT3G12110 93.6 1.5e-56 217.2
Hepe06g0319 . 1 107 Cytoskeleton Gene Families AT3G12110 92.5 2.6e-53 206.5
Hepe08g1258 . 1 377 Cytoskeleton Gene Families AT3G18780 93.4 2.2e-209 724.9
Hepe04g1131 . 1 377 Cytoskeleton Gene Families AT3G18780 93.1 4.9e-209 723.8
Hepe04g0855 . 1 377 Cytoskeleton Gene Families AT3G18780 92.3 2.4e-208 721.5
Hepe02g0785 . 1 377 Cytoskeleton Gene Families AT3G18780 92.0 5.4e-208 720.3
Hepe01g0800 . 1 357 Cytoskeleton Gene Families AT3G18780 92.2 3.1e-195 677.9
Hepe05g0523 . 87 275 Cytoskeleton Gene Families AT3G18780 93.1 1.2e-103 373.6
Hepe01g0302 . 1 177 Cytoskeleton Gene Families AT3G18780 91.5 1.1e-91 334.0
Hepe04g0054 . 2 110 Cytoskeleton Gene Families AT3G18780 91.7 1.7e-55 213.8
Hepe06g0319 . 1 107 Cytoskeleton Gene Families AT3G18780 89.7 1.7e-52 203.8
Hepe08g1258 . 1 377 Cytoskeleton Gene Families AT1G49240 93.6 7.6e-210 726.5
Hepe04g1131 . 1 377 Cytoskeleton Gene Families AT1G49240 93.4 1.7e-209 725.3
Hepe02g0785 . 1 377 Cytoskeleton Gene Families AT1G49240 92.3 1.9e-208 721.8
Hepe04g0855 . 1 377 Cytoskeleton Gene Families AT1G49240 92.0 5.4e-208 720.3
Hepe01g0800 . 1 357 Cytoskeleton Gene Families AT1G49240 92.4 1.1e-195 679.5
Hepe05g0523 . 87 275 Cytoskeleton Gene Families AT1G49240 93.7 4.3e-104 375.2
Hepe01g0302 . 1 177 Cytoskeleton Gene Families AT1G49240 91.5 1.1e-91 334.0
Hepe04g0054 . 2 110 Cytoskeleton Gene Families AT1G49240 91.7 1.7e-55 213.8
Hepe06g0319 . 1 107 Cytoskeleton Gene Families AT1G49240 89.7 1.7e-52 203.8
Hepe04g1131 . 1 377 Cytoskeleton Gene Families AT5G09810 98.4 8.4e-217 749.6
Hepe08g1258 . 1 377 Cytoskeleton Gene Families AT5G09810 98.1 1.9e-216 748.4
Hepe02g0785 . 1 377 Cytoskeleton Gene Families AT5G09810 95.2 5.6e-213 736.9
Hepe04g0855 . 1 377 Cytoskeleton Gene Families AT5G09810 95.8 3.6e-212 734.2
Hepe01g0800 . 1 357 Cytoskeleton Gene Families AT5G09810 95.0 5.1e-198 687.2
Hepe05g0523 . 87 275 Cytoskeleton Gene Families AT5G09810 98.4 9.2e-107 384.0
Hepe01g0302 . 1 177 Cytoskeleton Gene Families AT5G09810 97.2 1.6e-95 346.7
Hepe04g0054 . 1 110 Cytoskeleton Gene Families AT5G09810 92.7 1.3e-55 214.2
Hepe06g0319 . 1 107 Cytoskeleton Gene Families AT5G09810 90.7 2.9e-52 203.0
Hepe08g2631 . 1 131 Cytoskeleton Gene Families AT2G19760 77.1 6.8e-57 216.9
Hepe03g1504 . 237 367 Cytoskeleton Gene Families AT2G19760 73.3 9.8e-56 213.0
Hepe02g1450 . 1 131 Cytoskeleton Gene Families AT2G19760 73.3 4.1e-54 207.6
Hepe03g1504 . 237 367 Cytoskeleton Gene Families AT4G29350 74.8 2.6e-56 214.9
Hepe08g2631 . 1 131 Cytoskeleton Gene Families AT4G29350 76.3 7.5e-56 213.4
Hepe02g1450 . 1 131 Cytoskeleton Gene Families AT4G29350 72.5 4.6e-53 204.1
Hepe03g1504 . 237 367 Cytoskeleton Gene Families AT4G29340 73.9 9.1e-57 216.5
Hepe08g2631 . 1 131 Cytoskeleton Gene Families AT4G29340 71.6 6.5e-55 210.3
Hepe02g1450 . 1 131 Cytoskeleton Gene Families AT4G29340 70.1 1.2e-53 206.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000079 8 8 7 8 6 8 16 8 8 7 8 8 15 7 7 14 8 15 16 8 7 7 6 8 8 8 7 14 15 6 276