Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe01g0809 ATGTCTTTCCAGCATAAAAGCTTTTGGATACCTAGGGATGCTGGATGTTTAACTGATGGAGAGATGAACTATGATAGCTCCTCCAGAATTGAAACGAAGCGTGGCCATCAATGGTTTATGGATGGCACTGCACCAGAGCTATTCAGTAACAAGAAGCAAGCAATAGAAACTGTAAATACTAGACCTGTTCCAGGAGTTCCGCACATGAATGTTTCTCCCTGGGAAAACTCTTCAAGTTTTCAGTCAGTTCCTGGGCCCTTCACTGATCGCCTCTTTGGCTCAGAGCCAATACGAACTGTTAACTTGGTTGATAGAGGCATCACTGTTGGAAATGCAAATATGGACATGGGAAGAAAGGAGTTCGAGAATCATTTTGCAAACAATCCATCAGTTGGCTTGTCCATGTCTCAATCCATTGAGGATTCCTCATCATGCCTCAATTTTGGTGGAATTAGAAAAGTTAAAGTCAATCAAGTCAGGGATCCTGACATTGGCATGTCTGCCTCTTTGGGGCATGCCTATAGCAGGGGTGATAATGGTACAATTTCAATGGGTACAACATTTAACAAAACTCATGAGAACGCCATATCATTGGGCCAAACTTATAATAGTAGAGATGAGAATACCATATCGGTTGGCCCTGCATATCACAAGACAGATGACAATTTTATTTCAATGGGTCATGCTTTCAAGGGTGATGGAAATTTTATTACTATTGGTCATAACTATAGCAAGGGAGACAATAGCATCCTATCAATGAGTCAACCTTTTGACAAGGGGGATGACTCTTTTATTTCAATGGGCCAGTCTTACGAGAAAGCAGAAGGTAATATCATTTCTTTTGGTTCCTACAATAAAGGGCACGAAAATTTTATCTCAATGGGGCCAACCTATAGTAAGGCAGGTGATTCTTTCATTTCAATGGCTTCCTCCTATAATAAGGGAAATGATGATAGCTTATCAATGGGTCCAACCTATGACAAGGTACACTCTGACATTGTACATGTGGGTCCTAAATATGACAAAGCAGATTCTGGTGCTGTGTCTATGGCTCACAACTATCATAAGGGTGAGAGTAATACCATATCTTTTGGAGGTTTTGATGATGAGAATGGGGCAGATAATCCTTCTGGTGGGATCATTAGCAGTTATGACTTGTTAATGGCTAATCAGGCTTCTGCCCAAGCATCAGAAGTATCAACCCTGAGAGATTCAGTTGATCCCAATGTGGAAGTAAATATTAACAATGCCATCAAAGTTGATGCTAAAATTGACACAAGTTCCAAGCATAAAGAGGCTAGGATGACTAAGAAGGTGCCACCAAATAGCTTCCCTTCAAATGTTAAAAGCTTGCTCTCAACTGGTATGCTTGATGGGGTTCCTGTGAAATATGTTTCTTGGTCACGGGAGAAAAATCTCAAGGGAATTATAAAAGGGACTGGATACTTGTGCAGCTGTGACAACTGCAATCATTCTAAGGCTCTCAATGCTTATGAATTTGAGAGGCACGCTGGCTGCAAAACCAAACATCCAAATAATCACATTTATTTCGAGAATGGTAAAACTATCTATGCTGTTGTTCAAGAGCTAAAGAACACCCCTCAGGAGATGCTATTTGATACAATTCAGAATGTGACTGGCTCTCCCATTAATCAGAAGCACTTTCGTATTTGGAAAGCATCTTATCAAGCTGCCACCCTTGAACTCCAGCGTATTTATGGAAAAGATGAAGTAATTATGCCTTCTTGA 1749 40.59 MSFQHKSFWIPRDAGCLTDGEMNYDSSSRIETKRGHQWFMDGTAPELFSNKKQAIETVNTRPVPGVPHMNVSPWENSSSFQSVPGPFTDRLFGSEPIRTVNLVDRGITVGNANMDMGRKEFENHFANNPSVGLSMSQSIEDSSSCLNFGGIRKVKVNQVRDPDIGMSASLGHAYSRGDNGTISMGTTFNKTHENAISLGQTYNSRDENTISVGPAYHKTDDNFISMGHAFKGDGNFITIGHNYSKGDNSILSMSQPFDKGDDSFISMGQSYEKAEGNIISFGSYNKGHENFISMGPTYSKAGDSFISMASSYNKGNDDSLSMGPTYDKVHSDIVHVGPKYDKADSGAVSMAHNYHKGESNTISFGGFDDENGADNPSGGIISSYDLLMANQASAQASEVSTLRDSVDPNVEVNINNAIKVDAKIDTSSKHKEARMTKKVPPNSFPSNVKSLLSTGMLDGVPVKYVSWSREKNLKGIIKGTGYLCSCDNCNHSKALNAYEFERHAGCKTKHPNNHIYFENGKTIYAVVQELKNTPQEMLFDTIQNVTGSPINQKHFRIWKASYQAATLELQRIYGKDEVIMPS 582
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 71937427 71943038 - Hsped.01g08090.1 Hepe01g0809 559919

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe01g0809 582 PANTHER AUTOIMMUNE REGULATOR 6 563 - GO:0000977(PANTHER)|GO:0003682(PANTHER)|GO:0005634(PANTHER)|GO:0042393(PANTHER)|GO:0045944(PANTHER)
Hepe01g0809 582 Pfam Tify domain binding domain 475 530 IPR032308 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe01g0809 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g0809 Hepe-Chr1:71937427 Hepe05g0189 Hepe-Chr5:2366188 2.27e-43 wgd
Hepe01g0809 Hepe-Chr1:71937427 Hepe08g0810 Hepe-Chr8:7277635 1.32e-96 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe05g0307 . 202 923 PHD Transcription Factor Family AT2G36720 54.6 1.1e-228 790.4
Hepe05g0189 . 1 838 PHD Transcription Factor Family AT3G53680 53.0 8.9e-251 863.6
Hepe01g0809 . 434 563 PHD Transcription Factor Family AT3G53680 54.6 1.6e-37 155.2
Hepe08g0810 . 312 450 PHD Transcription Factor Family AT3G53680 51.8 2.7e-37 154.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003985 2 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 8 1 0 44