Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe01g0871 ATGGGATGGTTTCTCTGTTCTGGAAGTTCAAACAAGAAGGATAAACAGCAGCAGCAGCAGCAGCAGCAAGCTCAGAGGAAGGACGACGATCCGATCCCATCGACTTCAGAAAAATTGATGGTAAAGCCGGCATTTAATGGGAAGAACGAGGCTCTAAAAGATGGAGGTTCTGATCATATTTCAGCACAAACAATTACATTCTCATTCCGAGAGTTGGCAGCTGCTACGAAGTATTTTAGAGCAGACTGTCTTTTAGGTGAAGGAGGTTTTGGTCAAGTATATAAAGGACGATTAGAGAGCATACATCAGGTAGTTGCAATCAAGCAACTTGATCGAAATGGGCTACAAGGAAACAGGGAATTCCTGGTTGAAGTATTAATGTTAAGCCTACTCCATCATCCAAATCTTGTTAATTTAATTGGCTATTGTGCGGATGGTGATCAAAGACTTTTGGTTTATGAATACATGCCATTGGGATCTTTGGAAGACCATCTACATGATCTCCCACACGATAAAAGACGACTTGACTGGAATACAAGAATGAAAATAGCTGCTGGTGCTGCAAAGGGCTTAGAGTATTTGCATGACAAAGCTAACCCCCCAGTTATATATCGTGATCTGAAATGCTCTAACATCCTGCTTAGTGAAGATTACCATCCTAAGCTATCCGATTTCGGCTTGGCGAAATTGGGCCCCGTGGGGGATAACACTCACGTGTCCACAAGAGTGATGGGAACTTATGGATACTGTGCCCCTGAATATGCAATGACTGGCCAGCTCACTTTAAAATCAGATGTTTATAGCTTTGGAGTTGTTCTGCTCGAAATTATTACAGGCAGAAAAGCTATTGACAATTCAAGAGCCGCAGGGGAACATAATTTGGTGGCATGGGCACAACCCTTATTTAAAGACAGAAGGAAATTTTCGCAGATGGCTGATCCATTGCTCCTAGGACAATACCCAGTCAGAGGCTTATACCAAGCTCTTGCAGTAGCTGCAATGTGTGTTCAGGAACAGCCTCATATGCGACCCCTTATTGCTGATGTCGTCACAGCCCTTACATATCTTGCCTCCCAAAAACACGATCCCGAAACCCAGCCAGTTCATAGCGCTCGCAGTAGCTTGTCCACACCTAGATCTTCTAGAAGAGAACTGTGA 1158 43.78 MGWFLCSGSSNKKDKQQQQQQQQAQRKDDDPIPSTSEKLMVKPAFNGKNEALKDGGSDHISAQTITFSFRELAAATKYFRADCLLGEGGFGQVYKGRLESIHQVVAIKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEYMPLGSLEDHLHDLPHDKRRLDWNTRMKIAAGAAKGLEYLHDKANPPVIYRDLKCSNILLSEDYHPKLSDFGLAKLGPVGDNTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVLLEIITGRKAIDNSRAAGEHNLVAWAQPLFKDRRKFSQMADPLLLGQYPVRGLYQALAVAAMCVQEQPHMRPLIADVVTALTYLASQKHDPETQPVHSARSSLSTPRSSRREL 385
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 72816633 72820985 + Hsped.01g08710.1 Hepe01g0871 559981
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe01g0871 385 FunFam Serine/threonine-protein kinase PBS1 50 155 - -
Hepe01g0871 385 CDD STKc_IRAK 85 354 - -
Hepe01g0871 385 MobiDBLite consensus disorder prediction 361 378 - -
Hepe01g0871 385 Gene3D Phosphorylase Kinase; domain 1 44 155 - -
Hepe01g0871 385 ProSiteProfiles Protein kinase domain profile. 79 356 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe01g0871 385 SMART serkin_6 79 356 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe01g0871 385 PANTHER OS07G0668900 PROTEIN 17 374 - -
Hepe01g0871 385 SUPERFAMILY Protein kinase-like (PK-like) 63 366 IPR011009 -
Hepe01g0871 385 MobiDBLite consensus disorder prediction 1 35 - -
Hepe01g0871 385 Gene3D Transferase(Phosphotransferase) domain 1 156 376 - -
Hepe01g0871 385 MobiDBLite consensus disorder prediction 9 29 - -
Hepe01g0871 385 FunFam Serine/threonine-protein kinase PBS1 156 371 - -
Hepe01g0871 385 MobiDBLite consensus disorder prediction 361 385 - -
Hepe01g0871 385 ProSitePatterns Serine/Threonine protein kinases active-site signature. 202 214 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Hepe01g0871 385 Pfam Protein tyrosine and serine/threonine kinase 83 295 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Hepe01g0871 385 ProSitePatterns Protein kinases ATP-binding region signature. 85 108 IPR017441 GO:0005524(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g0871 Hepe-Chr1:72816633 Hepe05g0225 Hepe-Chr5:2666946 5.90e-200 dispersed
Hepe03g1152 Hepe-Chr3:64977080 Hepe01g0871 Hepe-Chr1:72816633 2.64e-177 transposed
Hepe05g1473 Hepe-Chr5:64166351 Hepe01g0871 Hepe-Chr1:72816633 3.98e-195 transposed
Hepe01g0871 Hepe-Chr1:72816633 Hepe05g0223 Hepe-Chr5:2634612 3.32e-180 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
72449 PF07714 PK_Tyr_Ser-Thr 1.00E-46 CL0016 Hepe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe01g0871 - - - 0.0