Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe01g0877 ATGATGTTGGATCTCAACGATTCGATTATGAACTGCGAAGAAACGACCGCGAATCGGATCGTAATGGAAGATTCGGAGACTTCGAATTCCTCCGTCGTTAATGCCGACGACGTCTGCAACAGCAGAGAGGAAGATTCCTCTGTTTTAATTTTTGATATTATCAAAAAGGAAAATTCCGGCTACGGCGGCGCGTTGCCGGAATTGGTGACTCAGGCGCTTTTTCCGGTACCCGGTGGGTTGGGGGATTCTGGGTCTCCGGTGCCGAGGACCCATTGGTTGAACCTGTCGTCGACGGCGGATTCCGGCGGCGGGGGACCGGCAGAGCTGAAAGTTGTGCAGCAGAAACAGCAGGTGAGGAAGAGCCGCCGTGGACCGCGGTCCCGGAGCTCGCAGTACCGGGGAGTTACTTTCTACCGGCGAACTGGAAGATGGGAATCTCATATTTGGGATTGTGGGAAACAAGTTTATTTGGGTGGGTTCGACACAGCCCATGCTGCAGCAAGGGCTTACGATCGAGCGGCTATAAAATTTAGAGGAGTGGATGCGGACATAAACTTCAACATAACCGATTACGACGAAGATATGAAACAGATGAAGAATCTGGGCAAAGAAGAGTTTGTGCATGCTCTTCGTCGGCAAAGCACTGGATTTTCTCGTGGAGGATCGAAGCTGAGAGGATTATCTCTTCAAAAATATGGAAGATGGGAAGCTCAAATGAGCCAAATCATTGGAAAGAATGGAATTGAGCAAAGGTCTATTAAAGGGGAGACAATGGTGGATGCAAGCAATGGAGGCAATGTCCACAATCTTGATCTGAGCATTGGAGGAATTTTCAACTACCATTTAAGTAATTCTTCCCAAAAGCTCAACATTGAGAGACCAAAGAATGAAAACATTGGTTGTGCATATGATGTGGGTGGACAACAACCTCAAATTCCTCCTTCTGTATGGTCTGGTTTTTACTCTGGTTTTTTAGCAGATAATGAGGATAGAGGAAGAGAGAAGAGAAACAACGACTCGACAAAGATCCCTACAAGTTGGGGATGGCAAATGCCAACGTCGATGTCGATGTCAATGCCAATGCCAATTCAAGGAAACCCGAGTGGAAAAAACAACAACAATATGAGTAATGGAATAATAGCAAAAGAAGAAGCTCATGTTTCCAAGATTGCAGCATCATCAGGATTCTCTTCCTCTCCTAATTTTAGTTCACTTTATGCCCAAAACAACACAACCCTCCATAGTACTCACTGCCTTCCAACACCTTCCACCAATATTTCTTGA 1284 46.11 MMLDLNDSIMNCEETTANRIVMEDSETSNSSVVNADDVCNSREEDSSVLIFDIIKKENSGYGGALPELVTQALFPVPGGLGDSGSPVPRTHWLNLSSTADSGGGGPAELKVVQQKQQVRKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFNITDYDEDMKQMKNLGKEEFVHALRRQSTGFSRGGSKLRGLSLQKYGRWEAQMSQIIGKNGIEQRSIKGETMVDASNGGNVHNLDLSIGGIFNYHLSNSSQKLNIERPKNENIGCAYDVGGQQPQIPPSVWSGFYSGFLADNEDRGREKRNNDSTKIPTSWGWQMPTSMSMSMPMPIQGNPSGKNNNNMSNGIIAKEEAHVSKIAASSGFSSSPNFSSLYAQNNTTLHSTHCLPTPSTNIS 427
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 72899616 72903978 + Hsped.01g08770.1 Hepe01g0877 559987
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe01g0877 427 FunFam AP2-like ethylene-responsive transcription factor 130 189 - -
Hepe01g0877 427 SUPERFAMILY DNA-binding domain 130 188 IPR016177 GO:0003677(InterPro)
Hepe01g0877 427 CDD AP2 131 189 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe01g0877 427 ProSiteProfiles AP2/ERF domain profile. 131 187 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe01g0877 427 Pfam AP2 domain 131 179 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe01g0877 427 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 28 249 - -
Hepe01g0877 427 Gene3D AP2/ERF domain 130 189 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe01g0877 427 SMART rav1_2 131 193 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe01g0877 427 MobiDBLite consensus disorder prediction 328 349 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g0877 Hepe-Chr1:72899616 Hepe08g0848 Hepe-Chr8:7688552 3.09e-80 dispersed
Hepe01g0877 Hepe-Chr1:72899616 Hepe04g0911 Hepe-Chr4:63387122 6.18e-68 wgd
Hepe01g0877 Hepe-Chr1:72899616 Hepe05g0230 Hepe-Chr5:2708197 3.93e-72 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54783 PF00847 AP2 5.90E-10 CL0081 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe01g0877 K09284 - csv:101204131 618.616