Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Hepe01g0877 | ATGATGTTGGATCTCAACGATTCGATTATGAACTGCGAAGAAACGACCGCGAATCGGATCGTAATGGAAGATTCGGAGACTTCGAATTCCTCCGTCGTTAATGCCGACGACGTCTGCAACAGCAGAGAGGAAGATTCCTCTGTTTTAATTTTTGATATTATCAAAAAGGAAAATTCCGGCTACGGCGGCGCGTTGCCGGAATTGGTGACTCAGGCGCTTTTTCCGGTACCCGGTGGGTTGGGGGATTCTGGGTCTCCGGTGCCGAGGACCCATTGGTTGAACCTGTCGTCGACGGCGGATTCCGGCGGCGGGGGACCGGCAGAGCTGAAAGTTGTGCAGCAGAAACAGCAGGTGAGGAAGAGCCGCCGTGGACCGCGGTCCCGGAGCTCGCAGTACCGGGGAGTTACTTTCTACCGGCGAACTGGAAGATGGGAATCTCATATTTGGGATTGTGGGAAACAAGTTTATTTGGGTGGGTTCGACACAGCCCATGCTGCAGCAAGGGCTTACGATCGAGCGGCTATAAAATTTAGAGGAGTGGATGCGGACATAAACTTCAACATAACCGATTACGACGAAGATATGAAACAGATGAAGAATCTGGGCAAAGAAGAGTTTGTGCATGCTCTTCGTCGGCAAAGCACTGGATTTTCTCGTGGAGGATCGAAGCTGAGAGGATTATCTCTTCAAAAATATGGAAGATGGGAAGCTCAAATGAGCCAAATCATTGGAAAGAATGGAATTGAGCAAAGGTCTATTAAAGGGGAGACAATGGTGGATGCAAGCAATGGAGGCAATGTCCACAATCTTGATCTGAGCATTGGAGGAATTTTCAACTACCATTTAAGTAATTCTTCCCAAAAGCTCAACATTGAGAGACCAAAGAATGAAAACATTGGTTGTGCATATGATGTGGGTGGACAACAACCTCAAATTCCTCCTTCTGTATGGTCTGGTTTTTACTCTGGTTTTTTAGCAGATAATGAGGATAGAGGAAGAGAGAAGAGAAACAACGACTCGACAAAGATCCCTACAAGTTGGGGATGGCAAATGCCAACGTCGATGTCGATGTCAATGCCAATGCCAATTCAAGGAAACCCGAGTGGAAAAAACAACAACAATATGAGTAATGGAATAATAGCAAAAGAAGAAGCTCATGTTTCCAAGATTGCAGCATCATCAGGATTCTCTTCCTCTCCTAATTTTAGTTCACTTTATGCCCAAAACAACACAACCCTCCATAGTACTCACTGCCTTCCAACACCTTCCACCAATATTTCTTGA | 1284 | 46.11 | MMLDLNDSIMNCEETTANRIVMEDSETSNSSVVNADDVCNSREEDSSVLIFDIIKKENSGYGGALPELVTQALFPVPGGLGDSGSPVPRTHWLNLSSTADSGGGGPAELKVVQQKQQVRKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFNITDYDEDMKQMKNLGKEEFVHALRRQSTGFSRGGSKLRGLSLQKYGRWEAQMSQIIGKNGIEQRSIKGETMVDASNGGNVHNLDLSIGGIFNYHLSNSSQKLNIERPKNENIGCAYDVGGQQPQIPPSVWSGFYSGFLADNEDRGREKRNNDSTKIPTSWGWQMPTSMSMSMPMPIQGNPSGKNNNNMSNGIIAKEEAHVSKIAASSGFSSSPNFSSLYAQNNTTLHSTHCLPTPSTNIS | 427 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 72899616 | 72903978 | + | Hsped.01g08770.1 | Hepe01g0877 | 559987 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Hepe01g0877 | 427 | FunFam | AP2-like ethylene-responsive transcription factor | 130 | 189 | - | - | |
Hepe01g0877 | 427 | SUPERFAMILY | DNA-binding domain | 130 | 188 | IPR016177 | GO:0003677(InterPro) | |
Hepe01g0877 | 427 | CDD | AP2 | 131 | 189 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Hepe01g0877 | 427 | ProSiteProfiles | AP2/ERF domain profile. | 131 | 187 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Hepe01g0877 | 427 | Pfam | AP2 domain | 131 | 179 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Hepe01g0877 | 427 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 28 | 249 | - | - | |
Hepe01g0877 | 427 | Gene3D | AP2/ERF domain | 130 | 189 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Hepe01g0877 | 427 | SMART | rav1_2 | 131 | 193 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Hepe01g0877 | 427 | MobiDBLite | consensus disorder prediction | 328 | 349 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Hepe01g0877 | Hepe-Chr1:72899616 | Hepe08g0848 | Hepe-Chr8:7688552 | 3.09e-80 | dispersed | |
Hepe01g0877 | Hepe-Chr1:72899616 | Hepe04g0911 | Hepe-Chr4:63387122 | 6.18e-68 | wgd | |
Hepe01g0877 | Hepe-Chr1:72899616 | Hepe05g0230 | Hepe-Chr5:2708197 | 3.93e-72 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
54783 | PF00847 | AP2 | 5.90E-10 | CL0081 | Hepe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Hepe01g0877 | K09284 | - | csv:101204131 | 618.616 |