Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe01g0881 ATGGACTCCAATAAAGAAAAGAATTGCAAATTTGGAGAGGAAAAGGAAAATACGGGGTTTGGGGAAAAAGTTTTTCACTTAATGACATACATTGGTAGGGAGATACAATTTCCAGATGCGATGAAAAATGGACACGGAAGAGAAGCAAATAAAATAAGGTATATAACATCAAACGAGACTAAAAAGAAGATAACATTAAGGAAGAGAGCGACTACGAGTGATGAAAGCGGAAGATTAAATATGAATCTTGATGCGAGAGAGGATCTCCCTCACATGGCCGAGCCACCCACCAGTCCGGCTGGCGGCAGCCACGAGAGCGGCGGAGAACAGAGCCCCAACACCGGCGGCGTCCGCGAACAGGACCGTTATCTTCCGATCGCCAACATTAGTCGGATCATGAAGAAAGCCTTGCCGGCTAATGGCAAGATCGCTAAAGATGCTAAGGATACCGTCCAGGAATGCGTCTCTGAATTTATCAGTTTCATTACTAGCGAGGCGAGTGATAAGTGCCAGAAGGAAAAGAGGAAGACTATTAATGGCGATGATTTGCTTTGGGCGATGGCGACGTTGGGTTTTGAGGATTATATTGATCCGCTTAAGTCGTACCTTACTAGGTACAGAGAGTGTGATGCTAAAGGATCTTCTAGAGGTGGTGACGAATCTTCTAAAAGAGATGCAGTTGGGGCCTTGCCTGTTCAAAATTCTCAGCAGTACATGCAGACGGGAGCATTGACTTACATGACCCAAGTAATTATCTCTCTTCTCTCAACTTGTCAACGTGCTGTTCAGGAATACCCTCCTTTTCATTGCTAA 813 44.9 MDSNKEKNCKFGEEKENTGFGEKVFHLMTYIGREIQFPDAMKNGHGREANKIRYITSNETKKKITLRKRATTSDESGRLNMNLDAREDLPHMAEPPTSPAGGSHESGGEQSPNTGGVREQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKSYLTRYRECDAKGSSRGGDESSKRDAVGALPVQNSQQYMQTGALTYMTQVIISLLSTCQRAVQEYPPFHC 270
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 72932981 72939480 + Hsped.01g08810.1 Hepe01g0881 559991
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe01g0881 270 ProSitePatterns NF-YB/HAP3 subunit signature. 154 170 IPR003956 GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe01g0881 270 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 107 237 IPR027113 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0001228(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)|GO:0016602(InterPro)|GO:0016602(PANTHER)
Hepe01g0881 270 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 123 187 IPR003958 -
Hepe01g0881 270 MobiDBLite consensus disorder prediction 89 119 - -
Hepe01g0881 270 Gene3D Histone, subunit A 112 245 IPR009072 GO:0046982(InterPro)
Hepe01g0881 270 PRINTS CCAAT-binding transcription factor subunit A signature 170 188 - -
Hepe01g0881 270 PRINTS CCAAT-binding transcription factor subunit A signature 189 207 - -
Hepe01g0881 270 PRINTS CCAAT-binding transcription factor subunit A signature 151 169 - -
Hepe01g0881 270 MobiDBLite consensus disorder prediction 103 117 - -
Hepe01g0881 270 SUPERFAMILY Histone-fold 120 226 IPR009072 GO:0046982(InterPro)
Hepe01g0881 270 FunFam Nuclear transcription factor Y subunit B-3 112 240 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g0881 Hepe-Chr1:72932981 Hepe08g0381 Hepe-Chr8:3406020 5.09e-52 dispersed
Hepe03g1918 Hepe-Chr3:76251358 Hepe01g0881 Hepe-Chr1:72932981 3.35e-44 transposed
Hepe06g0617 Hepe-Chr6:45893488 Hepe01g0881 Hepe-Chr1:72932981 2.62e-49 transposed
Hepe01g0881 Hepe-Chr1:72932981 Hepe05g0232 Hepe-Chr5:2736226 1.22e-73 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54784 PF00808 CBFD_NFYB_HMF 1.40E-27 CL0012 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe01g0881 K08065 - csv:101223123 280.411