Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe01g0881 ATGGACTCCAATAAAGAAAAGAATTGCAAATTTGGAGAGGAAAAGGAAAATACGGGGTTTGGGGAAAAAGTTTTTCACTTAATGACATACATTGGTAGGGAGATACAATTTCCAGATGCGATGAAAAATGGACACGGAAGAGAAGCAAATAAAATAAGGTATATAACATCAAACGAGACTAAAAAGAAGATAACATTAAGGAAGAGAGCGACTACGAGTGATGAAAGCGGAAGATTAAATATGAATCTTGATGCGAGAGAGGATCTCCCTCACATGGCCGAGCCACCCACCAGTCCGGCTGGCGGCAGCCACGAGAGCGGCGGAGAACAGAGCCCCAACACCGGCGGCGTCCGCGAACAGGACCGTTATCTTCCGATCGCCAACATTAGTCGGATCATGAAGAAAGCCTTGCCGGCTAATGGCAAGATCGCTAAAGATGCTAAGGATACCGTCCAGGAATGCGTCTCTGAATTTATCAGTTTCATTACTAGCGAGGCGAGTGATAAGTGCCAGAAGGAAAAGAGGAAGACTATTAATGGCGATGATTTGCTTTGGGCGATGGCGACGTTGGGTTTTGAGGATTATATTGATCCGCTTAAGTCGTACCTTACTAGGTACAGAGAGTGTGATGCTAAAGGATCTTCTAGAGGTGGTGACGAATCTTCTAAAAGAGATGCAGTTGGGGCCTTGCCTGTTCAAAATTCTCAGCAGTACATGCAGACGGGAGCATTGACTTACATGACCCAAGTAATTATCTCTCTTCTCTCAACTTGTCAACGTGCTGTTCAGGAATACCCTCCTTTTCATTGCTAA 813 44.9 MDSNKEKNCKFGEEKENTGFGEKVFHLMTYIGREIQFPDAMKNGHGREANKIRYITSNETKKKITLRKRATTSDESGRLNMNLDAREDLPHMAEPPTSPAGGSHESGGEQSPNTGGVREQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKSYLTRYRECDAKGSSRGGDESSKRDAVGALPVQNSQQYMQTGALTYMTQVIISLLSTCQRAVQEYPPFHC 270
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 72932981 72939480 + Hsped.01g08810.1 Hepe01g0881 559991

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe01g0881 270 ProSitePatterns NF-YB/HAP3 subunit signature. 154 170 IPR003956 GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe01g0881 270 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 107 237 IPR027113 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0001228(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)|GO:0016602(InterPro)|GO:0016602(PANTHER)
Hepe01g0881 270 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 123 187 IPR003958 -
Hepe01g0881 270 MobiDBLite consensus disorder prediction 89 119 - -
Hepe01g0881 270 Gene3D Histone, subunit A 112 245 IPR009072 GO:0046982(InterPro)
Hepe01g0881 270 PRINTS CCAAT-binding transcription factor subunit A signature 170 188 - -
Hepe01g0881 270 PRINTS CCAAT-binding transcription factor subunit A signature 189 207 - -
Hepe01g0881 270 PRINTS CCAAT-binding transcription factor subunit A signature 151 169 - -
Hepe01g0881 270 MobiDBLite consensus disorder prediction 103 117 - -
Hepe01g0881 270 SUPERFAMILY Histone-fold 120 226 IPR009072 GO:0046982(InterPro)
Hepe01g0881 270 FunFam Nuclear transcription factor Y subunit B-3 112 240 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe01g0881 K08065 - - csv:101223123 280.411
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g0881 Hepe-Chr1:72932981 Hepe08g0381 Hepe-Chr8:3406020 5.09e-52 dispersed
Hepe03g1918 Hepe-Chr3:76251358 Hepe01g0881 Hepe-Chr1:72932981 3.35e-44 transposed
Hepe06g0617 Hepe-Chr6:45893488 Hepe01g0881 Hepe-Chr1:72932981 2.62e-49 transposed
Hepe01g0881 Hepe-Chr1:72932981 Hepe05g0232 Hepe-Chr5:2736226 1.22e-73 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi13g452 . . . Bda15g00184 Bpe04g01683 Bpe15g01076 . Bma08g01142 . . . . Car04g01334 . . . . . . . . . . . . . . . . . . Cone1ag1336 Cone5ag0323 . . . . . . Blo13g00735 . Bda14g00336 Bda15g00376 Bpe04g01683 . . Bma08g00961 Sed07g2409 . . . . . . . . Bhi07g01026 Tan04g0390 Cmetu10g1537 . Hepe01g0881 . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe06g0593 . 13 174 CCAAT-HAP3 Transcription Factor Family AT5G47670 61.1 4.6e-48 188.3
Hepe06g0594 . 69 175 CCAAT-HAP3 Transcription Factor Family AT5G47670 82.2 6.0e-48 188.0
Hepe08g0381 . 6 119 CCAAT-HAP3 Transcription Factor Family AT5G47670 60.5 1.3e-37 153.7
Hepe06g0593 . 76 215 CCAAT-HAP3 Transcription Factor Family AT1G21970 67.8 1.9e-49 193.0
Hepe06g0594 . 77 216 CCAAT-HAP3 Transcription Factor Family AT1G21970 66.4 7.2e-49 191.0
Hepe08g0381 . 1 128 CCAAT-HAP3 Transcription Factor Family AT4G14540 83.8 5.1e-54 207.6
Hepe06g0617 . 19 122 CCAAT-HAP3 Transcription Factor Family AT4G14540 81.7 3.3e-45 178.3
Hepe01g0881 . 105 223 CCAAT-HAP3 Transcription Factor Family AT4G14540 69.7 6.2e-44 174.1
Hepe05g0232 . 75 181 CCAAT-HAP3 Transcription Factor Family AT4G14540 78.5 2.4e-43 172.2
Hepe03g1918 . 49 144 CCAAT-HAP3 Transcription Factor Family AT4G14540 74.0 8.7e-38 153.7
Hepe01g0881 . 92 208 CCAAT-HAP3 Transcription Factor Family AT2G38880 82.1 5.5e-50 194.1
Hepe05g0232 . 51 165 CCAAT-HAP3 Transcription Factor Family AT2G38880 79.1 8.8e-48 186.8
Hepe08g0381 . 20 113 CCAAT-HAP3 Transcription Factor Family AT2G38880 80.9 5.5e-42 167.5
Hepe06g0617 . 19 112 CCAAT-HAP3 Transcription Factor Family AT2G38880 78.7 8.0e-41 163.7
Hepe03g1918 . 45 155 CCAAT-HAP3 Transcription Factor Family AT2G38880 65.8 4.4e-39 157.9
Hepe03g1918 . 47 144 CCAAT-HAP3 Transcription Factor Family AT2G47810 84.7 8.1e-44 173.7
Hepe06g0617 . 21 116 CCAAT-HAP3 Transcription Factor Family AT2G47810 76.0 1.6e-39 159.5
Hepe08g0381 . 18 117 CCAAT-HAP3 Transcription Factor Family AT2G47810 72.0 4.6e-39 157.9
Hepe05g0232 . 51 223 CCAAT-HAP3 Transcription Factor Family AT2G37060 73.1 3.9e-60 228.0
Hepe01g0881 . 98 225 CCAAT-HAP3 Transcription Factor Family AT2G37060 78.6 2.7e-53 205.3
Hepe08g0381 . 6 116 CCAAT-HAP3 Transcription Factor Family AT2G37060 73.9 1.9e-43 172.6
Hepe06g0617 . 16 115 CCAAT-HAP3 Transcription Factor Family AT2G37060 76.0 1.5e-40 162.9
Hepe03g1918 . 48 150 CCAAT-HAP3 Transcription Factor Family AT2G37060 69.9 3.5e-37 151.8
Hepe08g0381 . 22 117 CCAAT-HAP3 Transcription Factor Family AT2G13570 85.4 6.3e-44 174.5
Hepe06g0617 . 21 116 CCAAT-HAP3 Transcription Factor Family AT2G13570 80.2 2.3e-41 166.0
Hepe05g0232 . 54 170 CCAAT-HAP3 Transcription Factor Family AT2G13570 70.1 2.9e-41 165.6
Hepe01g0881 . 118 212 CCAAT-HAP3 Transcription Factor Family AT2G13570 73.7 2.8e-39 159.1
Hepe03g1918 . 49 149 CCAAT-HAP3 Transcription Factor Family AT2G13570 72.3 1.4e-38 156.8
Hepe08g0381 . 1 121 CCAAT-HAP3 Transcription Factor Family AT5G47640 79.4 6.2e-51 197.6
Hepe06g0617 . 15 119 CCAAT-HAP3 Transcription Factor Family AT5G47640 85.7 7.1e-47 184.1
Hepe01g0881 . 118 228 CCAAT-HAP3 Transcription Factor Family AT5G47640 70.9 4.7e-43 171.4
Hepe05g0232 . 61 174 CCAAT-HAP3 Transcription Factor Family AT5G47640 71.1 1.5e-41 166.4
Hepe03g1918 . 49 145 CCAAT-HAP3 Transcription Factor Family AT5G47640 77.3 5.4e-39 157.9
Hepe05g0232 . 62 218 CCAAT-HAP3 Transcription Factor Family AT3G53340 72.0 4.1e-57 218.0
Hepe01g0881 . 103 225 CCAAT-HAP3 Transcription Factor Family AT3G53340 80.8 1.6e-53 206.1
Hepe08g0381 . 6 116 CCAAT-HAP3 Transcription Factor Family AT3G53340 72.1 3.4e-43 171.8
Hepe06g0617 . 16 115 CCAAT-HAP3 Transcription Factor Family AT3G53340 77.0 3.2e-41 165.2
Hepe03g1918 . 48 150 CCAAT-HAP3 Transcription Factor Family AT3G53340 70.9 7.3e-38 154.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000266 8 6 6 8 9 3 3 3 3 2 3 3 6 4 4 6 3 10 6 3 4 4 4 3 4 3 2 16 9 4 152
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54784 PF00808 CBFD_NFYB_HMF 1.40E-27 CL0012 Hepe TF