Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe01g0884 ATGGCTTACGTGGCCCAATGTACGAACTCCCCACCAACGCCGGTCACTCTTTCAAACCCCTTATCCTACTCCCCATCTTCTTCCTCCGCCGCCACTTCTCCTCCGCCACCTGCGGTGATCCTCAGCCCCTGCGCCGCCTGCAAAATCCTCCGCCGCCGCTGCGTCGAGAAGTGCGTTTTGGCTCCTTATTTCCCTCCCACCGAGCCCCTCAAATTCACCATTGCTCATAGAGTCTTTGGAGCTAGCAACATCATCAAATTTTTACAAGAACTTCCCGAGTCTCAGAGAACGGATGCAGTGAGCAGTATGGTGTACGAAGCAAATGCTCGACTACGAGATCCAGTATACGGTAGCGCGGGCGCAATCTGCCAGCTGCAAAAGCAAGTGAGTGAGCTGCAAGCTCAACTAGCCAAGGCTAGAGCAGAGGTAGCCAATATGCAGCAGCAACAAGCCAACTTACTAGCCTTGATTTGCATGGAAATGAGGCAATCACCGGAGCCCGTTTGGCCACCGCAGCTCGTCGACACCACTTGCTTCCTCGACGACGCCACCCTTAGCTCGCCGTGGGAGCCGCTCTGGACGTGA 585 55.56 MAYVAQCTNSPPTPVTLSNPLSYSPSSSSAATSPPPPAVILSPCAACKILRRRCVEKCVLAPYFPPTEPLKFTIAHRVFGASNIIKFLQELPESQRTDAVSSMVYEANARLRDPVYGSAGAICQLQKQVSELQAQLAKARAEVANMQQQQANLLALICMEMRQSPEPVWPPQLVDTTCFLDDATLSSPWEPLWT 194
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 73034843 73036461 + Hsped.01g08840.1 Hepe01g0884 559994
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe01g0884 194 Coils Coil 122 156 - -
Hepe01g0884 194 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 42 152 - -
Hepe01g0884 194 ProSiteProfiles LOB domain profile. 42 143 IPR004883 -
Hepe01g0884 194 Pfam Lateral organ boundaries (LOB) domain 43 140 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g0884 Hepe-Chr1:73034843 Hepe02g2983 Hepe-Chr2:79051994 7.60e-47 dispersed
Hepe01g0884 Hepe-Chr1:73034843 Hepe08g0862 Hepe-Chr8:7832793 3.47e-62 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54785 PF03195 LOB 1.50E-40 No_clan Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe01g0884 - - - 0.0