Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe01g0906 ATGAAGAGTGGACCCCACCACCCATGTGCCCTCCTCCTGTCTCCACCAGCTCCTGCCTCTCTCAATCATTACCCTTCTTTTCTTCCCATTTTACCCTTTCCTTTAACAAAACAAAATCCCCCCTTCTTCTCCATCTTCTTCTTCTTCATCTTCTCTCAACCATCTCAGCAATGGCTGCCATTGCTAACTTCTTCTAAGTTCTCACACAAGAAAAAGAAACCCCATCTTTCTTTCATGTCAAATTCTGAAACTCCCAACTCCACCAATGGCGGCGGCGGCGCCATCATCGACACCCACAAAACTCCCCCCTCTTCCAACGGAGCTCTCGTCGTCAAAAAACCCCCCTCCAAGGACCGTCACAGCAAGGTCGACGGCCGTGGACGCCGCATCCGTATGCCCATCATCTGCGCCGCTCGGGTATTTCAACTGACTCGCGAACTCGGTCATAAATCCGACGGTCAAACCATCGAGTGGCTCCTCCGCCAGGCCGAGCCTTCCATTATCGCCGCTACCGGCACCGGAACTACCCCGGCTAATTTCTCCTCCGTCTCTCTCTCCGTCAGAGGAAATGGCGGCTCCGCCTCTCTCTCTTCCCCTTCTTCCACTACCTCCACTCTCTCCCTCTCCCGTCCCCAGCCTCTCTCCGGCGGCCCCACGCCGTTCATTCTCGGCAAGCGCGTCAGGTCCGACGAAGACGGGAAGGACGATGGGTTGGGAGTGGGTCAGGCGGTTGGGTCCTTAGTGGGTCCGACGGGGCCGGGTGGGTACTGGGCGATTCCGGCTAGACCGGATTACGGACAGGTGTGGAGCTTTGCCGCCGCGGCTGCGGCTCCGTCGGAGATGGTGGTTCAACAGGGGATTGCTCAGCAGGCGTCGTTGTTTTCCCAACAGCCGATTAGAGAGGCGTCGGCGGCGAGAGTGGGGAATTACCTTCCCGGTCATCTGAATTTGCTAGCGTCTTTGTCCGGCGGCGGCCGGCGGGAAGATGACCCTCGCTGA 999 57.86 MKSGPHHPCALLLSPPAPASLNHYPSFLPILPFPLTKQNPPFFSIFFFFIFSQPSQQWLPLLTSSKFSHKKKKPHLSFMSNSETPNSTNGGGGAIIDTHKTPPSSNGALVVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPANFSSVSLSVRGNGGSASLSSPSSTTSTLSLSRPQPLSGGPTPFILGKRVRSDEDGKDDGLGVGQAVGSLVGPTGPGGYWAIPARPDYGQVWSFAAAAAAPSEMVVQQGIAQQASLFSQQPIREASAARVGNYLPGHLNLLASLSGGGRREDDPR 332
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 73300444 73302062 + Hsped.01g09060.1 Hepe01g0906 560016
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe01g0906 332 ProSiteProfiles TCP domain profile. 116 170 IPR017887 -
Hepe01g0906 332 Pfam TCP family transcription factor 116 198 IPR017887 -
Hepe01g0906 332 MobiDBLite consensus disorder prediction 188 237 - -
Hepe01g0906 332 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 90 226 IPR005333 GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0042752(PANTHER)|GO:0043565(PANTHER)
Hepe01g0906 332 MobiDBLite consensus disorder prediction 99 124 - -
Hepe01g0906 332 MobiDBLite consensus disorder prediction 188 214 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g0906 Hepe-Chr1:73300444 Hepe10g1732 Hepe-Chr10:54154477 4.14e-33 dispersed
Hepe01g0906 Hepe-Chr1:73300444 Hepe02g2449 Hepe-Chr2:70711405 2.36e-84 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54787 PF03634 TCP 6.40E-33 No_clan Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe01g0906 K16221 - csv:101206050 404.06