Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe01g0960 ATGGAAAACGCGGAGGAAATGAAGCCATCAGCTACAAACAATTTCCATACTGATGGCGGAACAGACACTGCTGAAGTTCAATTTTCAGAATTGTGTCAGAACGGATTACGTCTGGATGTGGAATGTTGTGATCAAGCGTTGAAGTTATTTAGAGAAACCAAGCACCTTTTGGTGGCAAATATATCAGCAATTGGCAGTGGAATTCCTGAAGAAGCCGAACGTTTTTGGTCTGCCTTTGTTTTATACTCTGTGAAGAGGCTGAGAGAAAAGAATTCAGATAGTTCACATCAGGGATCTGAGAACAATAGCTTCACTTTATGCCACATACTGAGAGTTTGCAAGCTGAACATTGTAGAATTTTTTAAAGAGTTGCCTCAGTTTGTTGTTAAAGCTGGTCCAGTATTAAGTAAGCTCTATGGTTCAGATTGGGAGAATAGACTAGAGGCAAAGGAGTTGCAAGCTAACTTCGTGCATTTGAGCCTCTTAAGCAAGTACTATAAGCGTGTCTACCGAGAATTCTTCTCCACCAGTGATGCTAATGTTGAAAAGCAGTCAGCTATATCCTGCCCTTCTGGTTACTTGTCTGATTACCATCGTTTTGGATGGTTGTTGTTTTTGGCACTTCGTGTACATGCTTTCAGTCGTTTTAAGGACTTGGTGACTTGCACTAATGGTTTGGTTTCCATTTTGGCTATTTTGATTCTTCATGTTCCCGTTCGTTTCAGAAACTTCAACATTCTTGACTCTGAACGCTTTGTTAAGAAAGGTGGAAAAGGAGTGGACCTGCTTGGATCACTTTGTAATGTCTATGACACCTCAGAGGAAGAACTGAGGGAAGTAATGGAGAAGGCGAATAGTTTGATAGAAGATATTTTGAAGAAGAAGCCTCGTTCGGCTTTTGAGTGTAATAGTAAAAACTTGGAGAATATTGACACTGAGGGTTTGATATACTTTGAAGGCTTAATGGAGGAGTCATCTCTTTCATCCAGTTTAGAAATTCTAGAAAAGGACTATGAAGATGCAATTCGTAATAAAGGTGAGCTCGATGAGCGGGTATTTGTTAATGATGAGGACAGTTTACTTGGGTCGGGTAGCTTGTCAGCAGGTGCTGTTACAACGAGTGGCATCAAGAGGAGGTTTGACTCAATATGCTCTCCTGCAAGGACAATAACAAGTCCAATGTCTCCACTTCGCTCTCCTGTTTCACATGCCAATGGTGCTCTTAATAGTGGCAACGCAAAACTTGCTGCCACACCTGTTAGCACAGCCATGACAACCGCGAAGTGGCTCAGAACTGTTATTTCTCCACTTCCTGCAAAACCTTCTGCGGAGATGGAGCGCTTTTTGGCTTCATGTGATAGAGATGTAACAAATGATGTAGTTCGCAGGGCGCATATAATATTAGAGGCTATATTTCCAAATAGTGCTCTAGGAGAGCGCTGTATAGCTGGAAATTTACAAAGTGCAAACCTCATGGATAACATCTGGGCAGAACAGCGACGTCTAGAAGCACTCAAGTTATATTATAGAGTTCTGGAAGCAATGTGCAGAGCAGAGTCTCAGATGCTGCATGTGACTAATTTGACCTCTTTGCTGACTAATGAGAGGTTCCATAGATGCATGCTGGCTTGTTCTGCCGAATTGGTTTTGGCAACACATAAAACTGTTACAATGTTGTTTCCTGCAGTATTGGAGAGAACTGGCATTACAGCTTTTGACCTTAGTAAGGTGATAGAAAGTTTCATTAGACATGAAGAATCACTTCCTAGAGAATTGAGGCGCCATCTTAATTCCTTGGAAGAACGGCTATTAGAGAGCATGGTATGGGAAAAAGGTTCATCAATGTATAACTCCCTGATTGTTGCTAAACCTGCCCTTGCTGCAGAAATAAATCGTCTAGGTTTATTAGCTGAACCCATGCCATCTTTGGATGCAATTGCTGTTCAAATCAACTTTTCTGGTATTGGGGTATCAACCATGCCTAATTTGCAAAAGCATGAGAGTTTGCAAGGTCAGAATGGGGATATAAGGTCACCAAAAAGAGTGTGCACAGATTTAAGAAGTGTGCTAGTGGAACGGAATTCCTTTACTTCTCCAGTGAAGGACCGTCTTCTGGCTTTCAGTGGTATTAAGTCTAAGCTTCTGCCACCTCCTTTACAGTCAGCATTTGCAAGTCCTACTCGGCCTAATCCTGGAGGTGGTGGAGAAACATGTGCTGAAACTGGAATTAACATATTTTTTAGCAAGATCACCAAGTTGGCTGCTGTTAGAGTCAATGGTATGGTGGAAAGGTTGCAGTTATCTCATCAGATCAGGGAGAATGTCTACTGCCTTTTCCAACAGATACTCAGTCAAAAGACATCACTATTATTTAATCGTCACATTGACCAGATCATCCTTTGTTGTTTCTATGGCGTTGCAAAGATATCTCAATTGAGCCTCACGTTTAGGGAAATCATTTACAACTACAGAAAACAACCACAATGTAAACCACAAGTCTTCCGCAGTGTGTTTGTTGATTGGTCTTCAGCACGTCGTAATGGGAGATCAGGACAGGATCACGTGGATATAATAACGTTCTACAATGAAATATTTATTCCTTCTGTAAAACCTTTGCTTGTTGAGATTGGCCCGGCTGGACCAACCATGAAAACTGACAGGGCTCCTCAAGTCAACAACAATAGTGATGCACCTTGTCCTGGATCGCCTAAGATATCTCCTTTTCCAAGTCTTCCCGATATGTCTCCAAAGAAAGTATCTTCAGCACATAATGTCTACGTCTCTCCATTAAGATCATCAAAGATGGATGCGTTGATTTCACATAGTTCTAAAAGCTACTACGCTTGCGTTGGAGAGAGCACTCATGCGTTTCAAAGCCCTTCAAAAGACCTTACCGCCATAAACAACCGTTTGAATGGCACACGAAAACTCCGAGGCACGCTAAATTTCGACGATGCGGACGTAGGTTTGGTCAGTGATTCGCTTGTGGCTAACAGCCTTTACCTACAAAATGGAAGTTGTGGATCATCTTCAGGTGCACCTATTAAATCTGAACAACCTGATTCTTAA 3069 41.84 MENAEEMKPSATNNFHTDGGTDTAEVQFSELCQNGLRLDVECCDQALKLFRETKHLLVANISAIGSGIPEEAERFWSAFVLYSVKRLREKNSDSSHQGSENNSFTLCHILRVCKLNIVEFFKELPQFVVKAGPVLSKLYGSDWENRLEAKELQANFVHLSLLSKYYKRVYREFFSTSDANVEKQSAISCPSGYLSDYHRFGWLLFLALRVHAFSRFKDLVTCTNGLVSILAILILHVPVRFRNFNILDSERFVKKGGKGVDLLGSLCNVYDTSEEELREVMEKANSLIEDILKKKPRSAFECNSKNLENIDTEGLIYFEGLMEESSLSSSLEILEKDYEDAIRNKGELDERVFVNDEDSLLGSGSLSAGAVTTSGIKRRFDSICSPARTITSPMSPLRSPVSHANGALNSGNAKLAATPVSTAMTTAKWLRTVISPLPAKPSAEMERFLASCDRDVTNDVVRRAHIILEAIFPNSALGERCIAGNLQSANLMDNIWAEQRRLEALKLYYRVLEAMCRAESQMLHVTNLTSLLTNERFHRCMLACSAELVLATHKTVTMLFPAVLERTGITAFDLSKVIESFIRHEESLPRELRRHLNSLEERLLESMVWEKGSSMYNSLIVAKPALAAEINRLGLLAEPMPSLDAIAVQINFSGIGVSTMPNLQKHESLQGQNGDIRSPKRVCTDLRSVLVERNSFTSPVKDRLLAFSGIKSKLLPPPLQSAFASPTRPNPGGGGETCAETGINIFFSKITKLAAVRVNGMVERLQLSHQIRENVYCLFQQILSQKTSLLFNRHIDQIILCCFYGVAKISQLSLTFREIIYNYRKQPQCKPQVFRSVFVDWSSARRNGRSGQDHVDIITFYNEIFIPSVKPLLVEIGPAGPTMKTDRAPQVNNNSDAPCPGSPKISPFPSLPDMSPKKVSSAHNVYVSPLRSSKMDALISHSSKSYYACVGESTHAFQSPSKDLTAINNRLNGTRKLRGTLNFDDADVGLVSDSLVANSLYLQNGSCGSSSGAPIKSEQPDS 1022
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 74083283 74092327 - Hsped.01g09600.1 Hepe01g0960 560070
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe01g0960 1022 Gene3D - 421 609 - -
Hepe01g0960 1022 MobiDBLite consensus disorder prediction 883 916 - -
Hepe01g0960 1022 PANTHER RETINOBLASTOMA-ASSOCIATED PROTEIN RB -RELATED 8 1019 IPR028309 GO:0000785(PANTHER)|GO:0000977(PANTHER)|GO:0005667(PANTHER)|GO:0006357(InterPro)|GO:0030154(PANTHER)|GO:0051726(InterPro)|GO:2000134(PANTHER)
Hepe01g0960 1022 Pfam Retinoblastoma-associated protein B domain 743 870 IPR002719 GO:0005634(InterPro)|GO:0051726(InterPro)
Hepe01g0960 1022 SUPERFAMILY Cyclin-like 741 910 IPR036915 -
Hepe01g0960 1022 SMART RB_A_2 418 619 IPR002720 GO:0005634(InterPro)|GO:0051726(InterPro)
Hepe01g0960 1022 Gene3D - 710 909 - -
Hepe01g0960 1022 FunFam Retinoblastoma-related protein 1 693 903 - -
Hepe01g0960 1022 FunFam Retinoblastoma-related protein 1 197 355 - -
Hepe01g0960 1022 Pfam Retinoblastoma-associated protein A domain 418 619 IPR002720 GO:0005634(InterPro)|GO:0051726(InterPro)
Hepe01g0960 1022 CDD CYCLIN_AtRBR_like 743 874 - -
Hepe01g0960 1022 MobiDBLite consensus disorder prediction 886 900 - -
Hepe01g0960 1022 Pfam Domain of unknown function (DUF3452) 98 236 IPR024599 -
Hepe01g0960 1022 FunFam Retinoblastoma-related protein 1 421 609 - -
Hepe01g0960 1022 SUPERFAMILY Cyclin-like 426 621 IPR036915 -
Hepe01g0960 1022 Coils Coil 270 294 - -
Hepe01g0960 1022 SMART DUF3452_2 87 236 IPR024599 -
Hepe01g0960 1022 Gene3D - 197 355 - -
Hepe01g0960 1022 Coils Coil 331 351 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g0960 Hepe-Chr1:74083283 Hepe01g0961 Hepe-Chr1:74100635 0.0 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54792 PF01858 RB_A 4.00E-64 CL0065 Hepe TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe01g0960 K04681 - csv:101219810 1878.22