Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe01g0961 ATGATTCTGACTGGAAGGAAGAGTTCCGGAAGGCCATATTGCAAACGGGGCTTTCAGAATTGTGTCAGATTACGTCTGGATGTGGAATCTTGTGATCAAGCGTTGAAGTTATTTAGAGAAACCAAGCACCTTTTGGTGGCAAATATATCAGCAATTGGCAGTGGAATTCCTGAAGAAGCCGAACGTTTTTGGTTTGCCTTTGTTTTATACTCTGTGAAGAGGCTGAGGGAAAAGAATTCAGAGAGTTCACATCAGGGATCTGAGAACAATAGCTTCACTTTATGCCACATACTGAGAGTTTGCAAGCTGAACATTGTAGAATTTTTTAAAGAGTTGCCTCAGTTTGTTGTTAAAGCTGGTCCAGTATTAAGTAAGCTCTATGGTTCAGATTGGGAGAATAGACTAGAGGCAAAGGAGTTGCAAGCTAACTTCGTGCATTTGAGCCTCTTAAGCAAGTACTATAAGCGTGTCTACCGAGAATTCTTCTCCACCAGTGATGCTAATGTTGAAAAGCAGTCAGCTATATCCTGCCCTTCTGGTTACTTGTCTGATTACCATCGTTTTGGATGGTTGTTGTTTTTGGCACTTCGTGTACATGCTTTCAGTCGTTTTAAGGACTTGGTGACTTGCACTAATGGTTTGGTTTCCATTTTGGCTATTTTGATTCTTCATGTTCCCGTTCGTTTCAGAAACTTCAACATTCTTGACTCTGAACGCTATGTTAAGAAAGGTGGAAAAGGAGTGGACCTGCTTGGATCACTTTGTAATGTCTATGACACCTCAGAGGAAGAACTGAGGGAAGTAATGGAGAAGGCGAATAGTTTGATAGAAGATATTTTGAAGAAGAAGCCTCGTTCGGCTTTTGAGTGTAATAGTAAAAACTTGGAGAATATTGACACTGAGGGTTTGATATACTTTGAAGGCTTAATGGAGGAGTCATCTCTTTCATCCAGTTTAGAAATTCTAGAAAAGGACTATGAAGATGCAATTCGTAATAAAGGTGAGCTCGATGAGCGGGTATTTGTTAATGACGAGGACAGTTTACTTGGGTCGGGTAGCTTGTCAGCAGGTGCTGTTACAACAAGTGGCATCAAGAGGAGGTTTGACTCAATATGCTCTCCTGCAAGGACAATAACAAGTCCAATGTCTCCACTTCGCTCTCCTGTTTCACATGCCAATGGTGCTCTTAATAGTGGCAACGCAAAACTTCCTGCCACACCTGTTAGCACAGCCATGACAACCGCGAAGTGGCTCAGAACTGTTATTTCTCCACTTCCAGCAAAACCTTCTGCGGAGATGGAGCGCTTTTTGGCTTCATGTGATAGAGATGTAACTAATGATGTAGTTCGCAGGGCGCATATAATATTAGAGGCTATATTTCCAAATAGTGCTCTAGGAGAGCGCTGTATAGCTGGAAATTTACAAAGTGCAAACCTCATGGATAACATCTGGGCAGAACAGCGACGTCTAGAAGCACTCAAGTTATATTATAGAGTTCTGGAAGCAATGTGCAGAGCAGAGTCTCAGATGCTGCATGTGACTAATTTGACCTCTTTGCTGACTAATGAGAGGTTCCATAGATGCATGCTGGCTTGTTCTGCCGAATTGGTTTTGGCAACACATAAAACTGTTACAATGTTGTTTCCTGCAGTATTGGAGAGAACTGGCATTACAGCTTTTGACCTTAGTAAGGTGATAGAAAGTTTCATTAGACATGAAGAATCACTTCCTAGAGAATTGAGGCGCCATCTTAATTCCTTGGAAGAACGGCTATTAGAGAGCATGGTATGGGAAAAAGGTTCATCAATGTATAACTCCCTGATTGTTGCTAAACCTGCCCTTGCTGCAGAAATAAATCGTCTAGGTTTATTAGCTGAACCCATGCCATCTTTGGATGCAATTGCTGTTCAAATCAACTTTTCTGGTATTGGGGTATCAACCATGCCTAATTTGCAAAAGCATGAGAGTTTGCAAGGTCAGAATGGGGATATAAGGTCACCAAAAAGAGTGTGCACAGATTTAAGAAGTGTGCTAGTGGAACGGAATTCCTTTACTTCTCCAGTGAAGGACCGTCTTCTGGCTTTCAGTGGTATTAAGTCTAAGCTTCTGCCACCTCCTTTACAGTCAGCATTTGCAAGTCCTACTCGGCCTAATCCTGGAGGTGGTGGAGAAACATGTGCTGAAACTGGAATTAACATATTTTTTAGCAAGATCACCAAGTTGGCTGCTGTTAGAGTCAATGGTATGGTGGAAAGGTTGCAGTTATCTCATCAGATCAGGGAGAATGTCTACTGCCTTTTCCAACAGATACTCAGTCAAAAGACATCACTATTATTTAATCGTCACATTGACCAGATCATCCTTTGTTGTTTCTATGGCGTTGCAAAGATATCTCAATTGAGCCTCACGTTTAGGGAAATCATTTACAACTACAGAAAACAACCACAATGTAAACCACAAGTCTTCCGCAGTGTGTTTGTTGATTGGTCTTCAGCACGTCGTAATGGGAGATCAGGACAGGATCACGTGGATATAATAACGTTCTACAATGAAATATTTATTCCTTCTGTAAAACCTTTGCTTGTTGAGATTGGCCCGGCTGGACCAACCATGAAAACTGACAGGGCTCCTCAAGTCAACAACAATAGTGATGCACCTTGTCCTGGATCGCCTAAGATATCTCCTTTTCCAAGTCTTCCCGATATGTCTCCAAAGAAAGTATCTTCAGCACATAATGTCTACGTCTCTCCATTAAGATCATCAAAGATGGATGCGTTGATTTCACATAGTTCTAAAAGCTACTACGCTTGCGTTGGAGAGAGCACTCATGCTTTTCAAAGCCCTTCAAAAGACCTTACCGCCATAAACAACCGTTTGAATGGCACACGAAAACTCCGAGGCACGCTAAATTTCGACGATGCGGACGTAGGTTTGGTCAGTGATTCGCTGGTGGCTAACAGCCTTTACCTACAAAATGGAAGTTGTGGATCATCTTCAGGTGCACCTATTAAATCTGAACAACCTGATTCTTAA 3033 41.94 MILTGRKSSGRPYCKRGFQNCVRLRLDVESCDQALKLFRETKHLLVANISAIGSGIPEEAERFWFAFVLYSVKRLREKNSESSHQGSENNSFTLCHILRVCKLNIVEFFKELPQFVVKAGPVLSKLYGSDWENRLEAKELQANFVHLSLLSKYYKRVYREFFSTSDANVEKQSAISCPSGYLSDYHRFGWLLFLALRVHAFSRFKDLVTCTNGLVSILAILILHVPVRFRNFNILDSERYVKKGGKGVDLLGSLCNVYDTSEEELREVMEKANSLIEDILKKKPRSAFECNSKNLENIDTEGLIYFEGLMEESSLSSSLEILEKDYEDAIRNKGELDERVFVNDEDSLLGSGSLSAGAVTTSGIKRRFDSICSPARTITSPMSPLRSPVSHANGALNSGNAKLPATPVSTAMTTAKWLRTVISPLPAKPSAEMERFLASCDRDVTNDVVRRAHIILEAIFPNSALGERCIAGNLQSANLMDNIWAEQRRLEALKLYYRVLEAMCRAESQMLHVTNLTSLLTNERFHRCMLACSAELVLATHKTVTMLFPAVLERTGITAFDLSKVIESFIRHEESLPRELRRHLNSLEERLLESMVWEKGSSMYNSLIVAKPALAAEINRLGLLAEPMPSLDAIAVQINFSGIGVSTMPNLQKHESLQGQNGDIRSPKRVCTDLRSVLVERNSFTSPVKDRLLAFSGIKSKLLPPPLQSAFASPTRPNPGGGGETCAETGINIFFSKITKLAAVRVNGMVERLQLSHQIRENVYCLFQQILSQKTSLLFNRHIDQIILCCFYGVAKISQLSLTFREIIYNYRKQPQCKPQVFRSVFVDWSSARRNGRSGQDHVDIITFYNEIFIPSVKPLLVEIGPAGPTMKTDRAPQVNNNSDAPCPGSPKISPFPSLPDMSPKKVSSAHNVYVSPLRSSKMDALISHSSKSYYACVGESTHAFQSPSKDLTAINNRLNGTRKLRGTLNFDDADVGLVSDSLVANSLYLQNGSCGSSSGAPIKSEQPDS 1010
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 74100635 74108834 + Hsped.01g09610.1 Hepe01g0961 560071
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe01g0961 1010 SUPERFAMILY Cyclin-like 729 898 IPR036915 -
Hepe01g0961 1010 SMART DUF3452_2 75 224 IPR024599 -
Hepe01g0961 1010 MobiDBLite consensus disorder prediction 871 904 - -
Hepe01g0961 1010 FunFam Retinoblastoma-related protein 1 409 597 - -
Hepe01g0961 1010 SMART RB_A_2 406 607 IPR002720 GO:0005634(InterPro)|GO:0051726(InterPro)
Hepe01g0961 1010 Gene3D - 185 343 - -
Hepe01g0961 1010 MobiDBLite consensus disorder prediction 874 888 - -
Hepe01g0961 1010 Gene3D - 698 897 - -
Hepe01g0961 1010 SUPERFAMILY Cyclin-like 414 609 IPR036915 -
Hepe01g0961 1010 CDD CYCLIN_AtRBR_like 731 862 - -
Hepe01g0961 1010 Pfam Domain of unknown function (DUF3452) 86 224 IPR024599 -
Hepe01g0961 1010 Pfam Retinoblastoma-associated protein B domain 731 858 IPR002719 GO:0005634(InterPro)|GO:0051726(InterPro)
Hepe01g0961 1010 FunFam Retinoblastoma-related protein 1 681 891 - -
Hepe01g0961 1010 Coils Coil 258 282 - -
Hepe01g0961 1010 FunFam Retinoblastoma-related protein 1 185 343 - -
Hepe01g0961 1010 PANTHER RETINOBLASTOMA-ASSOCIATED PROTEIN RB -RELATED 21 1007 IPR028309 GO:0000785(PANTHER)|GO:0000977(PANTHER)|GO:0005667(PANTHER)|GO:0006357(InterPro)|GO:0030154(PANTHER)|GO:0051726(InterPro)|GO:2000134(PANTHER)
Hepe01g0961 1010 Gene3D - 409 597 - -
Hepe01g0961 1010 Coils Coil 319 339 - -
Hepe01g0961 1010 Pfam Retinoblastoma-associated protein A domain 406 607 IPR002720 GO:0005634(InterPro)|GO:0051726(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g0960 Hepe-Chr1:74083283 Hepe01g0961 Hepe-Chr1:74100635 0.0 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54793 PF01858 RB_A 3.90E-64 CL0065 Hepe TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe01g0961 K04681 - csv:101219810 1823.91