Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Hepe01g0961 | ATGATTCTGACTGGAAGGAAGAGTTCCGGAAGGCCATATTGCAAACGGGGCTTTCAGAATTGTGTCAGATTACGTCTGGATGTGGAATCTTGTGATCAAGCGTTGAAGTTATTTAGAGAAACCAAGCACCTTTTGGTGGCAAATATATCAGCAATTGGCAGTGGAATTCCTGAAGAAGCCGAACGTTTTTGGTTTGCCTTTGTTTTATACTCTGTGAAGAGGCTGAGGGAAAAGAATTCAGAGAGTTCACATCAGGGATCTGAGAACAATAGCTTCACTTTATGCCACATACTGAGAGTTTGCAAGCTGAACATTGTAGAATTTTTTAAAGAGTTGCCTCAGTTTGTTGTTAAAGCTGGTCCAGTATTAAGTAAGCTCTATGGTTCAGATTGGGAGAATAGACTAGAGGCAAAGGAGTTGCAAGCTAACTTCGTGCATTTGAGCCTCTTAAGCAAGTACTATAAGCGTGTCTACCGAGAATTCTTCTCCACCAGTGATGCTAATGTTGAAAAGCAGTCAGCTATATCCTGCCCTTCTGGTTACTTGTCTGATTACCATCGTTTTGGATGGTTGTTGTTTTTGGCACTTCGTGTACATGCTTTCAGTCGTTTTAAGGACTTGGTGACTTGCACTAATGGTTTGGTTTCCATTTTGGCTATTTTGATTCTTCATGTTCCCGTTCGTTTCAGAAACTTCAACATTCTTGACTCTGAACGCTATGTTAAGAAAGGTGGAAAAGGAGTGGACCTGCTTGGATCACTTTGTAATGTCTATGACACCTCAGAGGAAGAACTGAGGGAAGTAATGGAGAAGGCGAATAGTTTGATAGAAGATATTTTGAAGAAGAAGCCTCGTTCGGCTTTTGAGTGTAATAGTAAAAACTTGGAGAATATTGACACTGAGGGTTTGATATACTTTGAAGGCTTAATGGAGGAGTCATCTCTTTCATCCAGTTTAGAAATTCTAGAAAAGGACTATGAAGATGCAATTCGTAATAAAGGTGAGCTCGATGAGCGGGTATTTGTTAATGACGAGGACAGTTTACTTGGGTCGGGTAGCTTGTCAGCAGGTGCTGTTACAACAAGTGGCATCAAGAGGAGGTTTGACTCAATATGCTCTCCTGCAAGGACAATAACAAGTCCAATGTCTCCACTTCGCTCTCCTGTTTCACATGCCAATGGTGCTCTTAATAGTGGCAACGCAAAACTTCCTGCCACACCTGTTAGCACAGCCATGACAACCGCGAAGTGGCTCAGAACTGTTATTTCTCCACTTCCAGCAAAACCTTCTGCGGAGATGGAGCGCTTTTTGGCTTCATGTGATAGAGATGTAACTAATGATGTAGTTCGCAGGGCGCATATAATATTAGAGGCTATATTTCCAAATAGTGCTCTAGGAGAGCGCTGTATAGCTGGAAATTTACAAAGTGCAAACCTCATGGATAACATCTGGGCAGAACAGCGACGTCTAGAAGCACTCAAGTTATATTATAGAGTTCTGGAAGCAATGTGCAGAGCAGAGTCTCAGATGCTGCATGTGACTAATTTGACCTCTTTGCTGACTAATGAGAGGTTCCATAGATGCATGCTGGCTTGTTCTGCCGAATTGGTTTTGGCAACACATAAAACTGTTACAATGTTGTTTCCTGCAGTATTGGAGAGAACTGGCATTACAGCTTTTGACCTTAGTAAGGTGATAGAAAGTTTCATTAGACATGAAGAATCACTTCCTAGAGAATTGAGGCGCCATCTTAATTCCTTGGAAGAACGGCTATTAGAGAGCATGGTATGGGAAAAAGGTTCATCAATGTATAACTCCCTGATTGTTGCTAAACCTGCCCTTGCTGCAGAAATAAATCGTCTAGGTTTATTAGCTGAACCCATGCCATCTTTGGATGCAATTGCTGTTCAAATCAACTTTTCTGGTATTGGGGTATCAACCATGCCTAATTTGCAAAAGCATGAGAGTTTGCAAGGTCAGAATGGGGATATAAGGTCACCAAAAAGAGTGTGCACAGATTTAAGAAGTGTGCTAGTGGAACGGAATTCCTTTACTTCTCCAGTGAAGGACCGTCTTCTGGCTTTCAGTGGTATTAAGTCTAAGCTTCTGCCACCTCCTTTACAGTCAGCATTTGCAAGTCCTACTCGGCCTAATCCTGGAGGTGGTGGAGAAACATGTGCTGAAACTGGAATTAACATATTTTTTAGCAAGATCACCAAGTTGGCTGCTGTTAGAGTCAATGGTATGGTGGAAAGGTTGCAGTTATCTCATCAGATCAGGGAGAATGTCTACTGCCTTTTCCAACAGATACTCAGTCAAAAGACATCACTATTATTTAATCGTCACATTGACCAGATCATCCTTTGTTGTTTCTATGGCGTTGCAAAGATATCTCAATTGAGCCTCACGTTTAGGGAAATCATTTACAACTACAGAAAACAACCACAATGTAAACCACAAGTCTTCCGCAGTGTGTTTGTTGATTGGTCTTCAGCACGTCGTAATGGGAGATCAGGACAGGATCACGTGGATATAATAACGTTCTACAATGAAATATTTATTCCTTCTGTAAAACCTTTGCTTGTTGAGATTGGCCCGGCTGGACCAACCATGAAAACTGACAGGGCTCCTCAAGTCAACAACAATAGTGATGCACCTTGTCCTGGATCGCCTAAGATATCTCCTTTTCCAAGTCTTCCCGATATGTCTCCAAAGAAAGTATCTTCAGCACATAATGTCTACGTCTCTCCATTAAGATCATCAAAGATGGATGCGTTGATTTCACATAGTTCTAAAAGCTACTACGCTTGCGTTGGAGAGAGCACTCATGCTTTTCAAAGCCCTTCAAAAGACCTTACCGCCATAAACAACCGTTTGAATGGCACACGAAAACTCCGAGGCACGCTAAATTTCGACGATGCGGACGTAGGTTTGGTCAGTGATTCGCTGGTGGCTAACAGCCTTTACCTACAAAATGGAAGTTGTGGATCATCTTCAGGTGCACCTATTAAATCTGAACAACCTGATTCTTAA | 3033 | 41.94 | MILTGRKSSGRPYCKRGFQNCVRLRLDVESCDQALKLFRETKHLLVANISAIGSGIPEEAERFWFAFVLYSVKRLREKNSESSHQGSENNSFTLCHILRVCKLNIVEFFKELPQFVVKAGPVLSKLYGSDWENRLEAKELQANFVHLSLLSKYYKRVYREFFSTSDANVEKQSAISCPSGYLSDYHRFGWLLFLALRVHAFSRFKDLVTCTNGLVSILAILILHVPVRFRNFNILDSERYVKKGGKGVDLLGSLCNVYDTSEEELREVMEKANSLIEDILKKKPRSAFECNSKNLENIDTEGLIYFEGLMEESSLSSSLEILEKDYEDAIRNKGELDERVFVNDEDSLLGSGSLSAGAVTTSGIKRRFDSICSPARTITSPMSPLRSPVSHANGALNSGNAKLPATPVSTAMTTAKWLRTVISPLPAKPSAEMERFLASCDRDVTNDVVRRAHIILEAIFPNSALGERCIAGNLQSANLMDNIWAEQRRLEALKLYYRVLEAMCRAESQMLHVTNLTSLLTNERFHRCMLACSAELVLATHKTVTMLFPAVLERTGITAFDLSKVIESFIRHEESLPRELRRHLNSLEERLLESMVWEKGSSMYNSLIVAKPALAAEINRLGLLAEPMPSLDAIAVQINFSGIGVSTMPNLQKHESLQGQNGDIRSPKRVCTDLRSVLVERNSFTSPVKDRLLAFSGIKSKLLPPPLQSAFASPTRPNPGGGGETCAETGINIFFSKITKLAAVRVNGMVERLQLSHQIRENVYCLFQQILSQKTSLLFNRHIDQIILCCFYGVAKISQLSLTFREIIYNYRKQPQCKPQVFRSVFVDWSSARRNGRSGQDHVDIITFYNEIFIPSVKPLLVEIGPAGPTMKTDRAPQVNNNSDAPCPGSPKISPFPSLPDMSPKKVSSAHNVYVSPLRSSKMDALISHSSKSYYACVGESTHAFQSPSKDLTAINNRLNGTRKLRGTLNFDDADVGLVSDSLVANSLYLQNGSCGSSSGAPIKSEQPDS | 1010 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 74100635 | 74108834 | + | Hsped.01g09610.1 | Hepe01g0961 | 560071 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Hepe01g0961 | 1010 | SUPERFAMILY | Cyclin-like | 729 | 898 | IPR036915 | - | |
Hepe01g0961 | 1010 | SMART | DUF3452_2 | 75 | 224 | IPR024599 | - | |
Hepe01g0961 | 1010 | MobiDBLite | consensus disorder prediction | 871 | 904 | - | - | |
Hepe01g0961 | 1010 | FunFam | Retinoblastoma-related protein 1 | 409 | 597 | - | - | |
Hepe01g0961 | 1010 | SMART | RB_A_2 | 406 | 607 | IPR002720 | GO:0005634(InterPro)|GO:0051726(InterPro) | |
Hepe01g0961 | 1010 | Gene3D | - | 185 | 343 | - | - | |
Hepe01g0961 | 1010 | MobiDBLite | consensus disorder prediction | 874 | 888 | - | - | |
Hepe01g0961 | 1010 | Gene3D | - | 698 | 897 | - | - | |
Hepe01g0961 | 1010 | SUPERFAMILY | Cyclin-like | 414 | 609 | IPR036915 | - | |
Hepe01g0961 | 1010 | CDD | CYCLIN_AtRBR_like | 731 | 862 | - | - | |
Hepe01g0961 | 1010 | Pfam | Domain of unknown function (DUF3452) | 86 | 224 | IPR024599 | - | |
Hepe01g0961 | 1010 | Pfam | Retinoblastoma-associated protein B domain | 731 | 858 | IPR002719 | GO:0005634(InterPro)|GO:0051726(InterPro) | |
Hepe01g0961 | 1010 | FunFam | Retinoblastoma-related protein 1 | 681 | 891 | - | - | |
Hepe01g0961 | 1010 | Coils | Coil | 258 | 282 | - | - | |
Hepe01g0961 | 1010 | FunFam | Retinoblastoma-related protein 1 | 185 | 343 | - | - | |
Hepe01g0961 | 1010 | PANTHER | RETINOBLASTOMA-ASSOCIATED PROTEIN RB -RELATED | 21 | 1007 | IPR028309 | GO:0000785(PANTHER)|GO:0000977(PANTHER)|GO:0005667(PANTHER)|GO:0006357(InterPro)|GO:0030154(PANTHER)|GO:0051726(InterPro)|GO:2000134(PANTHER) | |
Hepe01g0961 | 1010 | Gene3D | - | 409 | 597 | - | - | |
Hepe01g0961 | 1010 | Coils | Coil | 319 | 339 | - | - | |
Hepe01g0961 | 1010 | Pfam | Retinoblastoma-associated protein A domain | 406 | 607 | IPR002720 | GO:0005634(InterPro)|GO:0051726(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Hepe01g0960 | Hepe-Chr1:74083283 | Hepe01g0961 | Hepe-Chr1:74100635 | 0.0 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
54793 | PF01858 | RB_A | 3.90E-64 | CL0065 | Hepe | TR |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Hepe01g0961 | K04681 | - | csv:101219810 | 1823.91 |