Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe01g0990 ATGAGTTTGGATTCATTTTCGCTAGACAAAATGTCGATGAAGTTGCACCATATTGATCTAAAGGGTGGTTCAGGTACCCAGAGAAGGCTGAAGGATCTCACGTCTCAGTCTGCCAATAAGTTCTGTGCAGATTGTGGATCTCCAGATCCAAAATGGGTAACTGTGAGTTTTGGGGCATTTATTTGCATCAAGTGCTCTGGAGTACACCGAAGCCTTGGAGTGCACATATCTAAGGTTCTTTCAGTGAAGTTAGATGATTGGACAGATGAACAAGTTGATGCATTGATGAGTTTAGGTGGAAATACTGCCGTAAACAAAAAGTATGAACTTTTCATCCCAGAAGGTAATAAAAAACCAAAACCAGATTCCTCTATAGAGGAGCGTTTGGATTTTATAAGGAAAAAATATGAGCTGCTGCAATTCTCAAGTTTTGATGACCAGTTCTTCTGTCCTTTTCCACCCCCGCAGAAGAAAAATCCAACATTCACGCATTGCAATTCTAGTGATCATGGAAACCCAGAAAGGAGGAATTATGAAAAAGTACCAACAAAAAATCGAATTGGAAGTGCATTCCGGAACAGCTGGGGAAGAAAAGATTCTGATAAGACCTGCAAAAAGGGAAATCTGGTATTAAGCAGCTCAATGGCAGGTATGATTGAATTCGTTGGTTTAATCAAGGTCAACGTGGTAAGAGGAACCAATTTAGCTATCAGGGATGTCGTGACGAGCGATCCGTATGTAATTCTCTCGTTGGGTAATCAATCAGTGAAGACACGTGTTATAAAAAGCAGTTTGAATCCAGTCTGGAATGAGAGCCTAATGTTGTCAATTCCAGATCACATTCCTCCATTAAGGGTGATTGTGTATGACAAAGATACATTTTCGACCGATGACTTCATGGGTGAAGCAGAAATTGATATCAATCCGCTGCTCACCGCGGCCCGAGCCTGTGAGAAGTCCACAGCCAGTGAACCAATGCAGCTAGGAAAATGGGTTGCAAGCAAGGAGAACACTCTTGCAAAGGATGGCATCATCACTCTTGTAGATGGGAAGATCCGGCAAGACATCTCTTTGAAGCTGCAGAACGTCGAGAGGGGTGTGCTCGAGATGGAGCTCGAATGTGTTCCTCTTTCTCAGTAG 1140 42.72 MSLDSFSLDKMSMKLHHIDLKGGSGTQRRLKDLTSQSANKFCADCGSPDPKWVTVSFGAFICIKCSGVHRSLGVHISKVLSVKLDDWTDEQVDALMSLGGNTAVNKKYELFIPEGNKKPKPDSSIEERLDFIRKKYELLQFSSFDDQFFCPFPPPQKKNPTFTHCNSSDHGNPERRNYEKVPTKNRIGSAFRNSWGRKDSDKTCKKGNLVLSSSMAGMIEFVGLIKVNVVRGTNLAIRDVVTSDPYVILSLGNQSVKTRVIKSSLNPVWNESLMLSIPDHIPPLRVIVYDKDTFSTDDFMGEAEIDINPLLTAARACEKSTASEPMQLGKWVASKENTLAKDGIITLVDGKIRQDISLKLQNVERGVLEMELECVPLSQ 379
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 74520958 74528571 - Hsped.01g09900.1 Hepe01g0990 560100
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe01g0990 379 Gene3D Arf GTPase activating protein 11 148 IPR038508 -
Hepe01g0990 379 PRINTS HIV Rev interacting protein signature 79 100 IPR001164 GO:0005096(InterPro)
Hepe01g0990 379 PRINTS HIV Rev interacting protein signature 39 58 IPR001164 GO:0005096(InterPro)
Hepe01g0990 379 PRINTS HIV Rev interacting protein signature 58 75 IPR001164 GO:0005096(InterPro)
Hepe01g0990 379 SUPERFAMILY ArfGap/RecO-like zinc finger 27 141 IPR037278 -
Hepe01g0990 379 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 23 379 IPR044518 GO:0005096(InterPro)|GO:0005543(InterPro)
Hepe01g0990 379 SMART C2_3c 224 319 IPR000008 -
Hepe01g0990 379 CDD ArfGap 30 136 - -
Hepe01g0990 379 FunFam stromal membrane-associated protein 1 isoform X1 14 147 - -
Hepe01g0990 379 Gene3D C2 domain 222 377 IPR035892 -
Hepe01g0990 379 CDD C2_ArfGAP 222 366 - -
Hepe01g0990 379 ProSiteProfiles ARF GTPase-activating proteins domain profile. 27 141 IPR001164 GO:0005096(InterPro)
Hepe01g0990 379 Pfam Putative GTPase activating protein for Arf 28 141 IPR001164 GO:0005096(InterPro)
Hepe01g0990 379 ProSiteProfiles C2 domain profile. 205 321 IPR000008 -
Hepe01g0990 379 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 222 315 IPR035892 -
Hepe01g0990 379 SMART arf_gap_3 27 149 IPR001164 GO:0005096(InterPro)
Hepe01g0990 379 FunFam ADP-ribosylation factor GTPase-activating protein AGD12 221 379 - -
Hepe01g0990 379 Pfam C2 domain 224 312 IPR000008 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g0990 Hepe-Chr1:74520958 Hepe02g2498 Hepe-Chr2:71554621 7.21e-173 dispersed
Hepe01g0990 Hepe-Chr1:74520958 Hepe04g2050 Hepe-Chr4:75364914 3.38e-113 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe01g0990 K12486 - csv:101221541 645.195