Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Hepe01g0991 | ATGTCATCTGCAAATCCTTATTTTGTTGATGACATTCGGACCAAACCTGAAGTTATTGATCCTCCCCAAGATGATGACATGATGGATGTTAGTGAAAGTGTGAGTGATCCTGCTCGAAATGGAGGAAAACCTAATGTAGCCGTCTCTAGCAGCGTTCGTGAGCTGTTGGAGTGCCCTGTTTGCTTAAATTCTATGTACCCTCCAATTCACCAGTGTTCGAACGGTCACACGTTGTGTTCCGGTTGCAAGCCTAGGGTGCACAATCGGTGTCCTACCTGCAGGCATGAACTTGGCAATATCAGATGTCTTGCATTAGAGAAGGTGGCTGCATCTCTGGAACTTCCATGTAAATATCAAACTTTTGGATGTGTGGGCATATACCCGTACTATAGCAAGCTGAAACACGAATCTCAATGTGCAAATCGACCCTATAACTGTCCATATGCGGGGTCGGAATGCACAGTTATTGGCGATATTCCATTTTTGGTAGCCCACCTCAAGGATGATCACAAAGTTGACATGCATAGTGGGAGCACTTTTAATCACCGATATGTCAAGTCAAATCCGCAAGAGGTCGAAAATGCTACCTGGATGTTAACGGTTTTCAGCTGTTTTGGTCAGTGTTTTTGTTTACATTTCGAAGCTTTCCAACTCGGAATGGCACCCGTCTACATAGCTTTCTTGCGGTTTATGGGAGACGATAACGAAGCGAAGAACTACAGTTATAGTCTTGAGGTTGGTGGAAATGGAAGGAAGATGGTCTGGCAAGGAGTGCCACGGAGTATTCGGGACAGTCATCGAAAGGTACGAGACAGTTTCGACGGTCTTATTATCCAACGTAATATGGCTCTCTTCTTCTCCGGGGGAGATCGGAAAGAATTGAAACTCAGGGTAACTGGTAGGATTTGGAAGGAGCAGCAGTAA | 924 | 45.13 | MSSANPYFVDDIRTKPEVIDPPQDDDMMDVSESVSDPARNGGKPNVAVSSSVRELLECPVCLNSMYPPIHQCSNGHTLCSGCKPRVHNRCPTCRHELGNIRCLALEKVAASLELPCKYQTFGCVGIYPYYSKLKHESQCANRPYNCPYAGSECTVIGDIPFLVAHLKDDHKVDMHSGSTFNHRYVKSNPQEVENATWMLTVFSCFGQCFCLHFEAFQLGMAPVYIAFLRFMGDDNEAKNYSYSLEVGGNGRKMVWQGVPRSIRDSHRKVRDSFDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQQ | 307 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 74533023 | 74535509 | - | Hsped.01g09910.1 | Hepe01g0991 | 560101 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Hepe01g0991 | 307 | SUPERFAMILY | RING/U-box | 57 | 99 | - | - | |
Hepe01g0991 | 307 | CDD | RING-HC_SIAHs | 56 | 94 | - | - | |
Hepe01g0991 | 307 | CDD | Sina | 172 | 300 | - | - | |
Hepe01g0991 | 307 | ProSiteProfiles | Zinc finger RING-type profile. | 58 | 94 | IPR001841 | - | |
Hepe01g0991 | 307 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 111 | 165 | IPR013083 | - | |
Hepe01g0991 | 307 | Pfam | Sina, zinc finger | 107 | 182 | - | - | |
Hepe01g0991 | 307 | FunFam | E3 ubiquitin-protein ligase SINAT5-like | 16 | 109 | - | - | |
Hepe01g0991 | 307 | MobiDBLite | consensus disorder prediction | 1 | 46 | - | - | |
Hepe01g0991 | 307 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 21 | 110 | IPR013083 | - | |
Hepe01g0991 | 307 | FunFam | E3 ubiquitin-protein ligase SINAT5-like | 167 | 299 | - | - | |
Hepe01g0991 | 307 | SUPERFAMILY | TRAF domain-like | 111 | 303 | - | - | |
Hepe01g0991 | 307 | ProSiteProfiles | Zinc finger SIAH-type profile. | 111 | 171 | IPR013010 | GO:0008270(InterPro) | |
Hepe01g0991 | 307 | PANTHER | E3 UBIQUITIN PROTEIN LIGASE SIAH | 37 | 301 | IPR052088 | GO:0005737(PANTHER)|GO:0061630(PANTHER) | |
Hepe01g0991 | 307 | Pfam | Sina, TRAF-like domain | 202 | 299 | IPR018121 | GO:0005737(InterPro)|GO:0006511(InterPro)|GO:0007275(InterPro) | |
Hepe01g0991 | 307 | Gene3D | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 166 | 299 | IPR008974 | GO:0005515(InterPro) | |
Hepe01g0991 | 307 | Pfam | E3 ubiquitin-protein ligase sina/sinah, RING finger | 58 | 93 | IPR049548 | - | |
Hepe01g0991 | 307 | FunFam | E3 ubiquitin-protein ligase SINAT3 | 110 | 166 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Hepe01g0991 | Hepe-Chr1:74533023 | Hepe02g2500 | Hepe-Chr2:71600409 | 6.24e-218 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Hepe01g0991 | K04506 | - | csv:101205198 | 612.068 |