Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe01g1006 ATGGCAGGAATGTTTAATGGGGAGGGATCGTCGTCGGTAACTTCGTCGCCTTTGCAGCTCTTTCCGTGGTCGTTATCGCCCGGTATAGGATCGCCATACCCTTTTCTAAGGGAGCTCAAATCTGAAGAGAGGGGCTTGTGTCTGATTCACCTTCTTCTTGCCTGTGCTAACCAAGTTGCCATTGGCAACATTGAAAATGCTAATGTTGGCCTTGAGCAAATTTCTCACCTCGCTTCGCCCGACGGGGACACGATGCAGCGGATTGCTGCCTACTTCACCGAGGCGCTCGCCGATCGGATACTTAAATCCTGGCCTGGCTTACACAAAGCCTTGAACTCCACCAAAATATTGTCGGTCCCTGAAGAGATTCTTGCTCAGAGATTGTTCTTTGAACTATGTCCTTTCTTGAAGCTTGCATATGTGATAACAAATCAGGCTATTATAGAAGCTATGGAGGGAGAAAGGATGATTCATATTATTGATTTCAAATCTTGTGAACCTGCCCAATGGATAAACCTTCTTCAGACATTGAAGGATCGGCCAGACGGTCCGCCCCATGTGAGAATAACTGGAATTCACGAACAGAAGGAGGTGTTGGAACAAATGGCTCTTCGGCTTACCGAAGAGGCCGAGAAATGGGACATACCATTTCAGTTCACCCCCGTTGTTAGCAAGTTAGAGAACCTTGACCTTGAAAGTTTAAGGGTCAAGACAGGGGAAGCACTTGCAGTTAGCTCTGTACTTGAACTTCACTCAATCTTAGCTACCGACGACGATAAGAAAGCGTCGCCATCTGCATCGAAGAACTTGCAAAAACTCCTACGTATGAAGCAGCGAACACTCGGAGAGTGGCTCGAGACAGATTCGTTGCAAGTTTTCAGTAGCCCTGATTCAGCCTCAGTATCTTCCCCATCAGGATTGAATCCTTCCCAAAAGATGAATAGTTTTTTGACTGCGCTTTGGGGCCTTTCTCCAAAAGTGATGGTAATAACCGAGCAAGAATCAAACCTGAATGGATCTGCTTTCATGGAGAGAGTACTAGAAGCACTAAACTTCTATGCTGCATTGTTTGATTGCTTGGAGTCGACCGTGTCGAGATCATCGATCGAGCGACAAAGGGTCGAGAAGATGCTTTTAGGAGAGGAAATAAAAAACATCATTGCTTGCGAGGGGGCGGAGAGAACGGAGAGGCACGAAAAGCTCGAGAAATGGATACTAAGGCTCGAATCCGTGGGGTTCGGGAAGGTTCCATTGAGTTATCATAGTATGTTACTGGGAAGTAGATTGTTGCAGAGCTATGGATATGATGGGTATAAAATCAAAGAAGAGAATGGATTTTTGTTCATATGTTGGCAAGATAGGCCTCTTTTTTCAGTCTCTGCTTGGGGGTTTCAAAGGCAAAGCTCATAA 1410 45.89 MAGMFNGEGSSSVTSSPLQLFPWSLSPGIGSPYPFLRELKSEERGLCLIHLLLACANQVAIGNIENANVGLEQISHLASPDGDTMQRIAAYFTEALADRILKSWPGLHKALNSTKILSVPEEILAQRLFFELCPFLKLAYVITNQAIIEAMEGERMIHIIDFKSCEPAQWINLLQTLKDRPDGPPHVRITGIHEQKEVLEQMALRLTEEAEKWDIPFQFTPVVSKLENLDLESLRVKTGEALAVSSVLELHSILATDDDKKASPSASKNLQKLLRMKQRTLGEWLETDSLQVFSSPDSASVSSPSGLNPSQKMNSFLTALWGLSPKVMVITEQESNLNGSAFMERVLEALNFYAALFDCLESTVSRSSIERQRVEKMLLGEEIKNIIACEGAERTERHEKLEKWILRLESVGFGKVPLSYHSMLLGSRLLQSYGYDGYKIKEENGFLFICWQDRPLFSVSAWGFQRQSS 469
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 74696412 74699046 - Hsped.01g10060.1 Hepe01g1006 560116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe01g1006 469 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 43 462 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Hepe01g1006 469 Pfam GRAS domain family 48 462 IPR005202 -
Hepe01g1006 469 ProSiteProfiles GRAS family profile. 39 463 IPR005202 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g1006 Hepe-Chr1:74696412 Hepe09g1143 Hepe-Chr9:13336648 1.83e-206 dispersed
Hepe01g1006 Hepe-Chr1:74696412 Hepe08g0397 Hepe-Chr8:3565298 3.96e-66 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54800 PF03514 GRAS 1.10E-135 CL0063 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe01g1006 - - - 0.0