Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe01g1025 ATGACGAAAGACGACCAGGCGGCGGTGCGAGTGTTCTCCGGCAAGGATTACCACGACCCTCCGCCGGCTCCGCTGTTCGATGCGGCGGAGCTCGGCAAGTGGTCCTTTTACAGAGCCATCATTGCCGAGTTCATCGCCACCCTCCTGTTTCTCTATGTCACCATCTTGACTGTCATTGGTTACAATAGCCAGACCGACCCCCACAAGCCCGGCGCCGACGTTTGCGGCGGCGTTGGCATCCTCGGCATCGCTTGGTCCTTCGGCGGCATGATCTTCGTCCTAGTTTACTGCACCGCCGGTATTTCAGGTGGACACATAAACCCGGCAGTGACATTCGGGCTATTTCTAGCCCGTAAGGTGTCGCTGGTCCGAGCCGTGGCGTACATGGTGGCTCAGTGCTTGGGGGCCGTATGCGGAGTGGGGCTGGTGGAAGCGTTTCAAAAGACCTACTTCAACGAGTACGGCGGCGGTGCGAACCAGGTTGCCCATGGCTACAGCAAAGGCGTCGGCTTGAGCGCCGAAATCGTCGGCACTTTCGTCTTGGTCTACACCGTCTTCTCCGCCACCGACCCCAAGAGAAGCGCCAGAGACTCCCATGTTCCCGTATTGGCTCCACTTCCGATCGGGTTCGCCGTGTTCATGGTTCACTTAGCCACCATCCCTATTACCGGCACCGGCATCAACCCTGCTAGAAGTTTCGGCCCTGCTGTTATTTTAAACAAGGAAAAACCTTGGAATGACCACTGGATATTTTGGGTTGGGCCCTTCATCGGAGCCGCCATTGCAGCATTCTACCACCAGTTCATCTTGAGGGCCGGCGCCGCCAAGGCTCTTAGCTCTTTCAGGAGCAACCCATCTGTTTGA 864 57.41 MTKDDQAAVRVFSGKDYHDPPPAPLFDAAELGKWSFYRAIIAEFIATLLFLYVTILTVIGYNSQTDPHKPGADVCGGVGILGIAWSFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVAYMVAQCLGAVCGVGLVEAFQKTYFNEYGGGANQVAHGYSKGVGLSAEIVGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGPAVILNKEKPWNDHWIFWVGPFIGAAIAAFYHQFILRAGAAKALSSFRSNPSV 287
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 74942416 74947500 - Hsped.01g10250.1 Hepe01g1025 560135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe01g1025 287 Gene3D Glycerol uptake facilitator protein. 23 287 IPR023271 -
Hepe01g1025 287 CDD MIP 38 269 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Hepe01g1025 287 PRINTS Major intrinsic protein family signature 87 111 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Hepe01g1025 287 PRINTS Major intrinsic protein family signature 209 231 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Hepe01g1025 287 PRINTS Major intrinsic protein family signature 124 143 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Hepe01g1025 287 PRINTS Major intrinsic protein family signature 173 191 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Hepe01g1025 287 PRINTS Major intrinsic protein family signature 38 57 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Hepe01g1025 287 PRINTS Major intrinsic protein family signature 249 269 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Hepe01g1025 287 SUPERFAMILY Aquaporin-like 31 272 IPR023271 -
Hepe01g1025 287 FunFam Probable aquaporin PIP1-2 23 285 - -
Hepe01g1025 287 NCBIfam MIP family channel protein 42 266 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Hepe01g1025 287 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 6 283 IPR034294 GO:0005886(PANTHER)|GO:0015250(PANTHER)
Hepe01g1025 287 ProSitePatterns MIP family signature. 105 113 IPR022357 -
Hepe01g1025 287 Pfam Major intrinsic protein 31 266 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g1025 Hepe-Chr1:74942416 Hepe04g0930 Hepe-Chr4:63574595 1.03e-169 dispersed
Hepe01g1025 Hepe-Chr1:74942416 Hepe02g2960 Hepe-Chr2:78862804 3.98e-167 wgd
Hepe01g1025 Hepe-Chr1:74942416 Hepe04g0928 Hepe-Chr4:63560610 8.89e-145 wgd
Hepe01g1025 Hepe-Chr1:74942416 Hepe05g0256 Hepe-Chr5:3034094 3.12e-145 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe01g1025 K09872 - csv:101204956 536.184