Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe01g1033 ATGGCGCTCAATTACGAAAACGGCAACGACGCCGCCGCCGCCGAAATCAACATTTGCAACGGCAACGGCAACGGAAACGGCGACGCTCCCTTTAATTCGGACCCGTTGAATTGGGGGGCGGCGGCGGCCGCCATGAAGGGAAGTCATTTGGATGAGGTTAAGCGGATGGTGGAGGAGTACCGGAACCCGGTGGTCCGCCTCGGCGGTGAGAGCTTGACGATTGCGCAGGTCGCTGCCATTTCTGGCTGCGCCGGCGGTAATGTCACGGTGGAGCTAGCGGAGGAGAGTCGGGCCCGGGTGCAGGCGAGTAGCAATTGGGTGATGGAGAGTATGAATAAAGGTACGGATAGTTATGGTGTTACGACTGGATTTGGTGCAACTTCGCATAGAAGGACCAAGGAAGGAGGAGCTCTTCAAAGAGAACTTATTCGGTTTTTGAATGTCGGAATCTTTGGCAACGGCACCGACTTTTCTCATAAACTGTCACCGGCGGCAACTAGAGCTGCTATGTTGGTGAGAATCAACACTCTTTTACAAGGCTATTCGGGCATCCGATTCGAGATAATGGAAGCCATAGCCAAGTTTCTAAACCATGATATAACTCCATGTTTACCACTTAGGGGAACCATAACAGCATCAGGTGATTTGGTTCCTCTTTCCTACATTGCTGGACTTTTGATTGGCAGACCCAATTCCAAGGCTATTGGGCCAAATGGAGAGTCCATTAACCCATCTGAGGCCTTTGAGCTAGCTGGGATTGATGGTGGGTTTTTCGAGTTGCAACCCAAGGAGGGACTTGCTCTTGTGAATGGCACTGCTGTTGGATCTGGTTTGGCTTCTATAGTGCTTTATGAAGTCAATATTCTGGCTGTTCTTTCTGAAGTGTTGTCAGCTGTTTTCGCTGAAGTTATGCAAGGAAAACCTGAATTTACTGATCATTTGACGCATAAGTTAAAGCATCATCCTGGTCAGATTGAAGCTGCGGCTATAATGGAACATATATTGGATGGAAGCTCTTACGTGAAATCGGCTAAAGAGATTGATTCTTTGCAGAAGCCTAAACAAGATAGATATGCTCTTAGAACATCACCACAATGGCTTGGACCACAAATCGAAGTCATCCGAGCTGCCACTAAGATGATTGAAAGAGAAATAAATTCTGTGAACGACAATCCTTTGATTGATGTTTCGAGAAACAAGGCCTTACATGGTGGAAATTTTCAAGGCACACCAATTGGTGTGTCTATGGATAACACTAGACTAGCCATTGCTTCAATTGGCAAGCTTATGTTTGCTCAATTTTCAGAGCTCGTGAATGATTTCTACAACAATGGGTTGCCTTCCAATCTTTCGGCAAGCCGCAATCCTAGCTTGGATTATGGCTTCAAAGGAGCTGAAATCGCTATGGCATCGTATTGTTCTGAACTTCAATTCTTAGCCAACCCTGTGACAAACCACGTCCAAAGTGCGGAGCAACATAACCAAGATGTGAACTCTTTGGGGTTGATTTCTTCTAGAAAAACAGAAGAGGCAGTTGAGATATTGAAGTTGATGTCCACTACTTATTTGGTAGCTCTTTGTCAAGCTATTGACTTGAGACACTTGGAAGAAAATTTGAAGAGCATAGTGAAAAACACAATCAGTCAAGTAGCCAATAAAGTAGTAATCATGGAGTACAATGGAGAGCTCCACCCAATTCGATTTAGTGAAAAACATTTGCTTCAAGTGGTTGATAGAGAGCATGTTTTCACTTACATCGATGACCCTTGTAGTGCTACCTACCCACTAATGCAAAAGCTAAGACAAGTCCTAGTAGAGCATGCTTTGAACAATGGTGAGAAAGAAGAAAACATAAGCACTTCAATTTTTCACAAGATAGGAGCATTTGAGGAAGAACTAAAGACTCTCTTGCCAAAAGAAGTAGAAAATGCAAGAGTCGAATTTGAGAGTGAAAATTCGATAATTCCAAACCAAATCAAAGAATGCAGGTCCTACCCATTATACAAGTTCGTTAGAGAAACCTTAGGGGCAAGTTTACTAACAGGTGAGAAAGTCAAATCCCCTGGTGAAGAGTTCGATAAGGTTTTTTCAGCCATTTGTGTTGGAAAGTTGATTGATCCAATATTGGAATGTTTGAAAGGATGGAATGGTGCTCCCCTTCCCATCAACTAA 2172 44.2 MALNYENGNDAAAAEINICNGNGNGNGDAPFNSDPLNWGAAAAAMKGSHLDEVKRMVEEYRNPVVRLGGESLTIAQVAAISGCAGGNVTVELAEESRARVQASSNWVMESMNKGTDSYGVTTGFGATSHRRTKEGGALQRELIRFLNVGIFGNGTDFSHKLSPAATRAAMLVRINTLLQGYSGIRFEIMEAIAKFLNHDITPCLPLRGTITASGDLVPLSYIAGLLIGRPNSKAIGPNGESINPSEAFELAGIDGGFFELQPKEGLALVNGTAVGSGLASIVLYEVNILAVLSEVLSAVFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVKSAKEIDSLQKPKQDRYALRTSPQWLGPQIEVIRAATKMIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIASIGKLMFAQFSELVNDFYNNGLPSNLSASRNPSLDYGFKGAEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTEEAVEILKLMSTTYLVALCQAIDLRHLEENLKSIVKNTISQVANKVVIMEYNGELHPIRFSEKHLLQVVDREHVFTYIDDPCSATYPLMQKLRQVLVEHALNNGEKEENISTSIFHKIGAFEEELKTLLPKEVENARVEFESENSIIPNQIKECRSYPLYKFVRETLGASLLTGEKVKSPGEEFDKVFSAICVGKLIDPILECLKGWNGAPLPIN 723
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 75051102 75055797 + Hsped.01g10330.1 Hepe01g1033 560143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe01g1033 723 PANTHER HISTIDINE AMMONIA-LYASE 33 722 IPR001106 GO:0016841(PANTHER)|GO:0045548(PANTHER)
Hepe01g1033 723 Gene3D - 536 657 IPR023144 -
Hepe01g1033 723 FunFam Phenylalanine ammonia-lyase 273 561 - -
Hepe01g1033 723 Gene3D Fumarase/aspartase (Central domain) 273 718 - -
Hepe01g1033 723 Gene3D - 26 272 IPR024083 -
Hepe01g1033 723 CDD PAL-HAL 70 533 IPR001106 -
Hepe01g1033 723 FunFam Phenylalanine ammonia-lyase 536 657 - -
Hepe01g1033 723 NCBIfam phenylalanine ammonia-lyase 34 713 IPR005922 GO:0005737(InterPro)|GO:0006559(InterPro)|GO:0016841(InterPro)
Hepe01g1033 723 SUPERFAMILY L-aspartase-like 34 722 IPR008948 GO:0003824(InterPro)
Hepe01g1033 723 FunFam Phenylalanine ammonia-lyase 27 272 - -
Hepe01g1033 723 Pfam Aromatic amino acid lyase 72 546 IPR001106 -
Hepe01g1033 723 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 208 224 IPR022313 GO:0016841(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g1033 Hepe-Chr1:75051102 Hepe05g1065 Hepe-Chr5:51629891 0.0 dispersed
Hepe01g1033 Hepe-Chr1:75051102 Hepe04g0943 Hepe-Chr4:63784125 0.0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe01g1033 K10775 - rcu:8273543 1168.3