Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe01g1046 ATGGGTCCGTCGGAGAAGGACCTGAAAGACATGGTGGTGAGTCAACTGGCCGAGTCTGTAAGGCAGATTTCGAGTCTTCCTGAATGTAACGGCATCTGTAAGAAGATGTATGGGGATTTGATTCGAAGGGTCAAATTATTGAGCCCTCTGTTTGAGGAATTGAGAGATGGAGAGGAAGAAGAAGAAGAAGAAGAACTTGGATTAGATGTTCTTAAAGACTTGGAGTTGCTTAAAATTGCTTTGGATTCTGCTATTGAGCTTCTTAGGACGGTCAGCCGAGGTAGCAAGCTATTTCAGGCTTCGCGGTTGGAGAAGATAGTACTTGAGTTTCATCATATGACAGAAGATATTGAAGCAGCACTCAGCAAGCTTCCCATTGACAAGCTCGGGATCTCGGAGGAGGTTCGAGAACAGACTGAACTTGTTTGTGCCCAATTCAAACGAGCGAAAGAGAGGGTAGGTTCGGCCGATGCACAGTTAGACAAGGATTTAGCCTTATTACAGGAAGAAAAAGATCCTGACCCTGCAATATTGAAAAGACTTTCTGAAAAGATGCATCTTCGGACTATAAACGATATGAAGAAAGAGTCGTTAGCGATCCATGAGCTGGTGATCTCGAGCAATGGAGACCCAGGGGATGTTTTTGGAAACATGTCATCCATTTTAAAGAAGTTGAAGGATTTTGTACAATTAGAAAACCCAGAAGTTGAAACTTCTCAAGGTGAAAAAAGTACAACCATTAAACACAGATCTCCTGTTATCCCGGACGATTTCAGGTGCCCCATATCTCTTGAATTGATGAGGGATCCCGTCATCGTCGCCACCGGGCAGACTTATGAGAGATCTTGCATTCAGAAATGGTTGGATGCAGGCCACAAAACCTGTCCAAAAACTCAGCAGGCTTTACTACATACAGCCTTGACACCAAATTATGTTTTGAAGAGCCTGATTGGTTTGTGGTGTGAGAACAATGGCGTCGAACTGCCAAGGACGCAAGGTAGCTGTAGAAGCAGGAGAGCTGGAAGCAGTATTTCAGACTGTGATCGGGCGGCCATCGACGCCTTACTGGTAAAACTGGTAAATGGATCTCCAGAACAGAAAAGATCAGCTGCAGGTGAGCTTCGTTTACTAGCGAAGAGGAATTCGGATAACAGAATTTGTATTGCCGAGGCAGGAGCCATTCCGTACCTTGTCGAACTATTGTCCTCAAATGATACTAGAACTCAGGAGCATGCAGTTACAGCACTGTTGAATCTTTCAATCAACGATGGTAATAAAAGAACGATTGTCGATTTACGAGCCATACCCGCTATAGTAGAAGTGTTGAAAAATGCCAGCATGGAGGCAAGGGAAAATGCAGCTGCAACCCTTTTCAGCTTATCCGTTATAGACGAGAACAAGGTCGCAATCGGAGCAGCCGGGGCAATTCCTGCTCTTATAAGTTTGCTTTGTGAAGGTACTCCCAGAGGAAAGAAGGATGCTGCCACTGCTATTTTCAATCTTTCAATCTATCAGGGAAACAAAGCTAGGGCAGTAAGAGCAGGCATTGTGAATCCACTTATGGGATTTCTGAAAGATGCTGGAGGTAGCATGGTGGATGAAGCCCTAGCCATTCTGGCCATTCTTGCAACTCACCATGAAGGAAAGATTGCAATAGGACAAGCCGAGCCGATGGCGGTTCTATTGGAGTTCATCAGAACCGGTTCTCCACGCAACCGGGAAAACGCTGCTGCCGTTCTGTGGTCACTTTGCAATACCGATTTCGAGCAGTTGAAGGTAGCTAGGGAACATGGTGCAGAAGAGGCATTGAAAGAAGTAACTGAGAATGGCACAGATAGAGCAAAGAGGAAAGCAGGAAGCATTCTAGAGCTCTTTCAACGCTTTGATGGACCATCTGCTAATCTATAA 1908 45.18 MGPSEKDLKDMVVSQLAESVRQISSLPECNGICKKMYGDLIRRVKLLSPLFEELRDGEEEEEEEELGLDVLKDLELLKIALDSAIELLRTVSRGSKLFQASRLEKIVLEFHHMTEDIEAALSKLPIDKLGISEEVREQTELVCAQFKRAKERVGSADAQLDKDLALLQEEKDPDPAILKRLSEKMHLRTINDMKKESLAIHELVISSNGDPGDVFGNMSSILKKLKDFVQLENPEVETSQGEKSTTIKHRSPVIPDDFRCPISLELMRDPVIVATGQTYERSCIQKWLDAGHKTCPKTQQALLHTALTPNYVLKSLIGLWCENNGVELPRTQGSCRSRRAGSSISDCDRAAIDALLVKLVNGSPEQKRSAAGELRLLAKRNSDNRICIAEAGAIPYLVELLSSNDTRTQEHAVTALLNLSINDGNKRTIVDLRAIPAIVEVLKNASMEARENAAATLFSLSVIDENKVAIGAAGAIPALISLLCEGTPRGKKDAATAIFNLSIYQGNKARAVRAGIVNPLMGFLKDAGGSMVDEALAILAILATHHEGKIAIGQAEPMAVLLEFIRTGSPRNRENAAAVLWSLCNTDFEQLKVAREHGAEEALKEVTENGTDRAKRKAGSILELFQRFDGPSANL 635
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 75165057 75168332 + Hsped.01g10460.1 Hepe01g1046 560156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe01g1046 635 Gene3D - 424 529 IPR011989 -
Hepe01g1046 635 SUPERFAMILY RING/U-box 250 329 - -
Hepe01g1046 635 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 392 434 IPR000225 GO:0005515(InterPro)
Hepe01g1046 635 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 254 327 IPR013083 -
Hepe01g1046 635 Pfam U-box domain 254 324 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Hepe01g1046 635 Gene3D - 11 127 IPR036537 GO:0007166(InterPro)
Hepe01g1046 635 ProSiteProfiles U-box domain profile. 253 327 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Hepe01g1046 635 FunFam RING-type E3 ubiquitin transferase 337 630 - -
Hepe01g1046 635 Gene3D - 333 423 IPR011989 -
Hepe01g1046 635 FunFam RING-type E3 ubiquitin transferase 9 127 - -
Hepe01g1046 635 SMART arm_5 504 544 IPR000225 GO:0005515(InterPro)
Hepe01g1046 635 SMART arm_5 422 462 IPR000225 GO:0005515(InterPro)
Hepe01g1046 635 SMART arm_5 463 503 IPR000225 GO:0005515(InterPro)
Hepe01g1046 635 SMART arm_5 381 421 IPR000225 GO:0005515(InterPro)
Hepe01g1046 635 SMART arm_5 545 585 IPR000225 GO:0005515(InterPro)
Hepe01g1046 635 SUPERFAMILY ARM repeat 351 625 IPR016024 -
Hepe01g1046 635 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 433 475 IPR000225 GO:0005515(InterPro)
Hepe01g1046 635 PANTHER U BOX DOMAIN-CONTAINING 34 627 - -
Hepe01g1046 635 SMART Ubox_2 257 320 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Hepe01g1046 635 CDD RING-Ubox_PUB 255 307 IPR045210 -
Hepe01g1046 635 Gene3D - 530 633 IPR011989 -
Hepe01g1046 635 Pfam Armadillo/beta-catenin-like repeat 422 461 IPR000225 GO:0005515(InterPro)
Hepe01g1046 635 Pfam Armadillo/beta-catenin-like repeat 464 502 IPR000225 GO:0005515(InterPro)
Hepe01g1046 635 Pfam Armadillo/beta-catenin-like repeat 381 420 IPR000225 GO:0005515(InterPro)
Hepe01g1046 635 FunFam RING-type E3 ubiquitin transferase 254 327 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g1046 Hepe-Chr1:75165057 Hepe10g1222 Hepe-Chr10:47330852 3.31e-134 dispersed
Hepe01g1046 Hepe-Chr1:75165057 Hepe08g0796 Hepe-Chr8:7142474 1.60e-139 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe01g1046 K27628 - csv:101221065 1050.04