Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe01g1046 ATGGGTCCGTCGGAGAAGGACCTGAAAGACATGGTGGTGAGTCAACTGGCCGAGTCTGTAAGGCAGATTTCGAGTCTTCCTGAATGTAACGGCATCTGTAAGAAGATGTATGGGGATTTGATTCGAAGGGTCAAATTATTGAGCCCTCTGTTTGAGGAATTGAGAGATGGAGAGGAAGAAGAAGAAGAAGAAGAACTTGGATTAGATGTTCTTAAAGACTTGGAGTTGCTTAAAATTGCTTTGGATTCTGCTATTGAGCTTCTTAGGACGGTCAGCCGAGGTAGCAAGCTATTTCAGGCTTCGCGGTTGGAGAAGATAGTACTTGAGTTTCATCATATGACAGAAGATATTGAAGCAGCACTCAGCAAGCTTCCCATTGACAAGCTCGGGATCTCGGAGGAGGTTCGAGAACAGACTGAACTTGTTTGTGCCCAATTCAAACGAGCGAAAGAGAGGGTAGGTTCGGCCGATGCACAGTTAGACAAGGATTTAGCCTTATTACAGGAAGAAAAAGATCCTGACCCTGCAATATTGAAAAGACTTTCTGAAAAGATGCATCTTCGGACTATAAACGATATGAAGAAAGAGTCGTTAGCGATCCATGAGCTGGTGATCTCGAGCAATGGAGACCCAGGGGATGTTTTTGGAAACATGTCATCCATTTTAAAGAAGTTGAAGGATTTTGTACAATTAGAAAACCCAGAAGTTGAAACTTCTCAAGGTGAAAAAAGTACAACCATTAAACACAGATCTCCTGTTATCCCGGACGATTTCAGGTGCCCCATATCTCTTGAATTGATGAGGGATCCCGTCATCGTCGCCACCGGGCAGACTTATGAGAGATCTTGCATTCAGAAATGGTTGGATGCAGGCCACAAAACCTGTCCAAAAACTCAGCAGGCTTTACTACATACAGCCTTGACACCAAATTATGTTTTGAAGAGCCTGATTGGTTTGTGGTGTGAGAACAATGGCGTCGAACTGCCAAGGACGCAAGGTAGCTGTAGAAGCAGGAGAGCTGGAAGCAGTATTTCAGACTGTGATCGGGCGGCCATCGACGCCTTACTGGTAAAACTGGTAAATGGATCTCCAGAACAGAAAAGATCAGCTGCAGGTGAGCTTCGTTTACTAGCGAAGAGGAATTCGGATAACAGAATTTGTATTGCCGAGGCAGGAGCCATTCCGTACCTTGTCGAACTATTGTCCTCAAATGATACTAGAACTCAGGAGCATGCAGTTACAGCACTGTTGAATCTTTCAATCAACGATGGTAATAAAAGAACGATTGTCGATTTACGAGCCATACCCGCTATAGTAGAAGTGTTGAAAAATGCCAGCATGGAGGCAAGGGAAAATGCAGCTGCAACCCTTTTCAGCTTATCCGTTATAGACGAGAACAAGGTCGCAATCGGAGCAGCCGGGGCAATTCCTGCTCTTATAAGTTTGCTTTGTGAAGGTACTCCCAGAGGAAAGAAGGATGCTGCCACTGCTATTTTCAATCTTTCAATCTATCAGGGAAACAAAGCTAGGGCAGTAAGAGCAGGCATTGTGAATCCACTTATGGGATTTCTGAAAGATGCTGGAGGTAGCATGGTGGATGAAGCCCTAGCCATTCTGGCCATTCTTGCAACTCACCATGAAGGAAAGATTGCAATAGGACAAGCCGAGCCGATGGCGGTTCTATTGGAGTTCATCAGAACCGGTTCTCCACGCAACCGGGAAAACGCTGCTGCCGTTCTGTGGTCACTTTGCAATACCGATTTCGAGCAGTTGAAGGTAGCTAGGGAACATGGTGCAGAAGAGGCATTGAAAGAAGTAACTGAGAATGGCACAGATAGAGCAAAGAGGAAAGCAGGAAGCATTCTAGAGCTCTTTCAACGCTTTGATGGACCATCTGCTAATCTATAA 1908 45.18 MGPSEKDLKDMVVSQLAESVRQISSLPECNGICKKMYGDLIRRVKLLSPLFEELRDGEEEEEEEELGLDVLKDLELLKIALDSAIELLRTVSRGSKLFQASRLEKIVLEFHHMTEDIEAALSKLPIDKLGISEEVREQTELVCAQFKRAKERVGSADAQLDKDLALLQEEKDPDPAILKRLSEKMHLRTINDMKKESLAIHELVISSNGDPGDVFGNMSSILKKLKDFVQLENPEVETSQGEKSTTIKHRSPVIPDDFRCPISLELMRDPVIVATGQTYERSCIQKWLDAGHKTCPKTQQALLHTALTPNYVLKSLIGLWCENNGVELPRTQGSCRSRRAGSSISDCDRAAIDALLVKLVNGSPEQKRSAAGELRLLAKRNSDNRICIAEAGAIPYLVELLSSNDTRTQEHAVTALLNLSINDGNKRTIVDLRAIPAIVEVLKNASMEARENAAATLFSLSVIDENKVAIGAAGAIPALISLLCEGTPRGKKDAATAIFNLSIYQGNKARAVRAGIVNPLMGFLKDAGGSMVDEALAILAILATHHEGKIAIGQAEPMAVLLEFIRTGSPRNRENAAAVLWSLCNTDFEQLKVAREHGAEEALKEVTENGTDRAKRKAGSILELFQRFDGPSANL 635
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 75165057 75168332 + Hsped.01g10460.1 Hepe01g1046 560156

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe01g1046 635 Gene3D - 424 529 IPR011989 -
Hepe01g1046 635 SUPERFAMILY RING/U-box 250 329 - -
Hepe01g1046 635 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 392 434 IPR000225 GO:0005515(InterPro)
Hepe01g1046 635 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 254 327 IPR013083 -
Hepe01g1046 635 Pfam U-box domain 254 324 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Hepe01g1046 635 Gene3D - 11 127 IPR036537 GO:0007166(InterPro)
Hepe01g1046 635 ProSiteProfiles U-box domain profile. 253 327 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Hepe01g1046 635 FunFam RING-type E3 ubiquitin transferase 337 630 - -
Hepe01g1046 635 Gene3D - 333 423 IPR011989 -
Hepe01g1046 635 FunFam RING-type E3 ubiquitin transferase 9 127 - -
Hepe01g1046 635 SMART arm_5 504 544 IPR000225 GO:0005515(InterPro)
Hepe01g1046 635 SMART arm_5 422 462 IPR000225 GO:0005515(InterPro)
Hepe01g1046 635 SMART arm_5 463 503 IPR000225 GO:0005515(InterPro)
Hepe01g1046 635 SMART arm_5 381 421 IPR000225 GO:0005515(InterPro)
Hepe01g1046 635 SMART arm_5 545 585 IPR000225 GO:0005515(InterPro)
Hepe01g1046 635 SUPERFAMILY ARM repeat 351 625 IPR016024 -
Hepe01g1046 635 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 433 475 IPR000225 GO:0005515(InterPro)
Hepe01g1046 635 PANTHER U BOX DOMAIN-CONTAINING 34 627 - -
Hepe01g1046 635 SMART Ubox_2 257 320 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Hepe01g1046 635 CDD RING-Ubox_PUB 255 307 IPR045210 -
Hepe01g1046 635 Gene3D - 530 633 IPR011989 -
Hepe01g1046 635 Pfam Armadillo/beta-catenin-like repeat 422 461 IPR000225 GO:0005515(InterPro)
Hepe01g1046 635 Pfam Armadillo/beta-catenin-like repeat 464 502 IPR000225 GO:0005515(InterPro)
Hepe01g1046 635 Pfam Armadillo/beta-catenin-like repeat 381 420 IPR000225 GO:0005515(InterPro)
Hepe01g1046 635 FunFam RING-type E3 ubiquitin transferase 254 327 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe01g1046 K27628 - - csv:101221065 1050.04
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g1046 Hepe-Chr1:75165057 Hepe10g1222 Hepe-Chr10:47330852 3.31e-134 dispersed
Hepe01g1046 Hepe-Chr1:75165057 Hepe08g0796 Hepe-Chr8:7142474 1.60e-139 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe02g2080 . 1 899 U-box Gene Family AT5G15400 76.3 0.0e+00 1364.0
Hepe08g1171 . 196 829 U-box Gene Family AT2G23140 66.0 6.7e-118 421.8
Hepe10g0096 . 1 771 U-box Gene Family AT1G24330 59.4 6.2e-243 837.4
Hepe10g1529 . 1 590 U-box Gene Family AT1G24330 65.5 4.8e-211 731.5
Hepe10g0096 . 1 770 U-box Gene Family AT1G67530 59.7 6.5e-240 827.4
Hepe10g1529 . 1 590 U-box Gene Family AT1G67530 65.2 4.0e-205 711.8
Hepe04g1801 . 1 362 U-box Gene Family AT4G21350 62.1 1.6e-119 426.4
Hepe06g1836 . 134 457 U-box Gene Family AT3G07360 57.8 1.2e-83 307.0
Hepe01g0523 . 258 444 U-box Gene Family AT1G71020 71.8 3.4e-74 276.2
Hepe02g2667 . 264 461 U-box Gene Family AT1G71020 55.0 7.5e-53 205.3
Hepe01g1046 . 217 421 U-box Gene Family AT1G71020 51.4 5.5e-48 189.1
Hepe08g0796 . 256 432 U-box Gene Family AT1G71020 56.3 9.5e-48 188.3
Hepe10g1222 . 258 427 U-box Gene Family AT1G71020 57.8 9.5e-48 188.3
Hepe01g0523 . 16 648 U-box Gene Family AT1G23030 57.1 6.1e-108 388.7
Hepe08g0796 . 93 636 U-box Gene Family AT2G28830 52.3 2.4e-101 366.7
Hepe10g1222 . 93 638 U-box Gene Family AT2G28830 57.3 3.6e-94 342.8
Hepe10g1222 . 1 648 U-box Gene Family AT3G46510 67.2 2.5e-160 562.8
Hepe08g0796 . 3 642 U-box Gene Family AT3G46510 64.7 1.4e-158 557.0
Hepe01g1046 . 9 628 U-box Gene Family AT3G46510 57.4 1.2e-120 431.0
Hepe01g1046 . 1 630 U-box Gene Family AT3G54850 67.4 3.6e-164 575.5
Hepe08g0796 . 13 629 U-box Gene Family AT3G54850 54.6 1.2e-111 401.0
Hepe08g0340 . 144 696 U-box Gene Family AT5G42340 64.0 3.3e-120 429.5
Hepe04g0691 . 1 667 U-box Gene Family AT5G01830 57.8 4.7e-202 701.4
Hepe07g1836 . 1 711 U-box Gene Family AT1G29340 60.6 1.7e-234 809.3
Hepe02g1008 . 27 442 U-box Gene Family AT5G37490 50.8 1.4e-111 400.2
Hepe05g0444 . 3 412 U-box Gene Family AT3G52450 52.2 1.5e-121 433.3
Hepe04g0644 . 7 425 U-box Gene Family AT3G52450 53.1 3.2e-119 425.6
Hepe05g0444 . 2 410 U-box Gene Family AT2G35930 54.3 1.2e-123 440.3
Hepe08g0193 . 6 407 U-box Gene Family AT2G35930 52.1 8.8e-119 424.1
Hepe04g0644 . 6 425 U-box Gene Family AT2G35930 52.7 3.3e-118 422.2
Hepe04g1125 . 1 402 U-box Gene Family AT5G64660 54.5 6.2e-120 427.9
Hepe04g1125 . 1 402 U-box Gene Family AT5G09800 51.7 7.2e-105 377.9
Hepe01g1842 . 1 454 U-box Gene Family AT3G49810 64.8 2.7e-161 565.5
Hepe08g1345 . 1 434 U-box Gene Family AT3G49810 62.8 2.7e-153 538.9
Hepe01g1842 . 1 454 U-box Gene Family AT5G65920 63.9 4.8e-155 544.7
Hepe08g1345 . 1 434 U-box Gene Family AT5G65920 64.5 7.2e-151 530.8
Hepe05g1955 . 73 948 U-box Gene Family AT2G45910 51.2 1.2e-231 800.0
Hepe06g1389 . 35 828 U-box Gene Family AT4G25160 53.8 2.6e-226 782.3
Hepe02g3127 . 60 556 U-box Gene Family AT5G40140 56.9 1.2e-91 334.3
Hepe07g2250 . 30 492 U-box Gene Family AT5G40140 50.4 1.2e-51 201.4
Hepe08g1513 . 4 812 U-box Gene Family AT1G76390 61.3 2.6e-271 931.8
Hepe08g1513 . 13 812 U-box Gene Family AT1G20780 62.7 1.7e-280 962.2
Hepe10g0096 . 1 773 U-box Gene Family AT1G27910 62.8 1.7e-264 909.1
Hepe10g1529 . 1 768 U-box Gene Family AT1G27910 55.1 1.4e-218 756.5
Hepe04g1316 . 1 591 U-box Gene Family AT5G67530 74.2 2.8e-259 891.3
Hepe05g1885 . 3 157 U-box Gene Family AT5G67530 53.5 3.2e-45 180.3
Hepe05g1688 . 1 517 U-box Gene Family AT1G04510 74.4 3.0e-225 778.1
Hepe05g1688 . 1 486 U-box Gene Family AT2G33340 73.4 1.4e-208 722.6
Hepe06g1837 . 10 278 U-box Gene Family AT3G07370 65.4 4.7e-100 361.3
Hepe02g2080 . 1 899 U-box Gene Family AT5G15400 76.3 0.0e+00 1364.0
Hepe08g1171 . 196 829 U-box Gene Family AT2G23140 66.0 6.7e-118 421.8
Hepe10g0096 . 1 771 U-box Gene Family AT1G24330 59.4 6.2e-243 837.4
Hepe10g1529 . 1 590 U-box Gene Family AT1G24330 65.5 4.8e-211 731.5
Hepe10g0096 . 1 770 U-box Gene Family AT1G67530 59.7 6.5e-240 827.4
Hepe10g1529 . 1 590 U-box Gene Family AT1G67530 65.2 4.0e-205 711.8
Hepe04g1801 . 1 362 U-box Gene Family AT4G21350 62.1 1.6e-119 426.4
Hepe06g1836 . 134 457 U-box Gene Family AT3G07360 57.8 1.2e-83 307.0
Hepe01g0523 . 258 444 U-box Gene Family AT1G71020 71.8 3.4e-74 276.2
Hepe02g2667 . 264 461 U-box Gene Family AT1G71020 55.0 7.5e-53 205.3
Hepe01g1046 . 217 421 U-box Gene Family AT1G71020 51.4 5.5e-48 189.1
Hepe08g0796 . 256 432 U-box Gene Family AT1G71020 56.3 9.5e-48 188.3
Hepe10g1222 . 258 427 U-box Gene Family AT1G71020 57.8 9.5e-48 188.3
Hepe01g0523 . 16 648 U-box Gene Family AT1G23030 57.1 6.1e-108 388.7
Hepe08g0796 . 93 636 U-box Gene Family AT2G28830 52.3 2.4e-101 366.7
Hepe10g1222 . 93 638 U-box Gene Family AT2G28830 57.3 3.6e-94 342.8
Hepe10g1222 . 1 648 U-box Gene Family AT3G46510 67.2 2.5e-160 562.8
Hepe08g0796 . 3 642 U-box Gene Family AT3G46510 64.7 1.4e-158 557.0
Hepe01g1046 . 9 628 U-box Gene Family AT3G46510 57.4 1.2e-120 431.0
Hepe01g1046 . 1 630 U-box Gene Family AT3G54850 67.4 3.6e-164 575.5
Hepe08g0796 . 13 629 U-box Gene Family AT3G54850 54.6 1.2e-111 401.0
Hepe08g0340 . 144 696 U-box Gene Family AT5G42340 64.0 3.3e-120 429.5
Hepe04g0691 . 1 667 U-box Gene Family AT5G01830 57.8 4.7e-202 701.4
Hepe07g1836 . 1 711 U-box Gene Family AT1G29340 60.6 1.7e-234 809.3
Hepe02g1008 . 27 442 U-box Gene Family AT5G37490 50.8 1.4e-111 400.2
Hepe05g0444 . 3 412 U-box Gene Family AT3G52450 52.2 1.5e-121 433.3
Hepe04g0644 . 7 425 U-box Gene Family AT3G52450 53.1 3.2e-119 425.6
Hepe05g0444 . 2 410 U-box Gene Family AT2G35930 54.3 1.2e-123 440.3
Hepe08g0193 . 6 407 U-box Gene Family AT2G35930 52.1 8.8e-119 424.1
Hepe04g0644 . 6 425 U-box Gene Family AT2G35930 52.7 3.3e-118 422.2
Hepe04g1125 . 1 402 U-box Gene Family AT5G64660 54.5 6.2e-120 427.9
Hepe04g1125 . 1 402 U-box Gene Family AT5G09800 51.7 7.2e-105 377.9
Hepe01g1842 . 1 454 U-box Gene Family AT3G49810 64.8 2.7e-161 565.5
Hepe08g1345 . 1 434 U-box Gene Family AT3G49810 62.8 2.7e-153 538.9
Hepe01g1842 . 1 454 U-box Gene Family AT5G65920 63.9 4.8e-155 544.7
Hepe08g1345 . 1 434 U-box Gene Family AT5G65920 64.5 7.2e-151 530.8
Hepe05g1955 . 73 948 U-box Gene Family AT2G45910 51.2 1.2e-231 800.0
Hepe06g1389 . 35 828 U-box Gene Family AT4G25160 53.8 2.6e-226 782.3
Hepe02g3127 . 60 556 U-box Gene Family AT5G40140 56.9 1.2e-91 334.3
Hepe07g2250 . 30 492 U-box Gene Family AT5G40140 50.4 1.2e-51 201.4
Hepe08g1513 . 4 812 U-box Gene Family AT1G76390 61.3 2.6e-271 931.8
Hepe08g1513 . 13 812 U-box Gene Family AT1G20780 62.7 1.7e-280 962.2
Hepe10g0096 . 1 773 U-box Gene Family AT1G27910 62.8 1.7e-264 909.1
Hepe10g1529 . 1 768 U-box Gene Family AT1G27910 55.1 1.4e-218 756.5
Hepe04g1316 . 1 591 U-box Gene Family AT5G67530 74.2 2.8e-259 891.3
Hepe05g1885 . 3 157 U-box Gene Family AT5G67530 53.5 3.2e-45 180.3
Hepe05g1688 . 1 517 U-box Gene Family AT1G04510 74.4 3.0e-225 778.1
Hepe05g1688 . 1 486 U-box Gene Family AT2G33340 73.4 1.4e-208 722.6
Hepe06g1837 . 10 278 U-box Gene Family AT3G07370 65.4 4.7e-100 361.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010303 1 1 1 0 0 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 0 1 1 1 32