Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe01g1056 ATGTTTCCTGTTCTTAGCATTCTCTTCATATGGATGTCTGGTTCTATCTTTCGTGTCGATTCTGCTTCTTTCAATCTTACATTGCCCCATCAGCATCCTGACCCTGATTCCGTTGCTGATGAACTTCAAAGGAGTGTCAATTCATCTGTATGGAGAAGGAAAATGCTATCCTCCGAATCAAAGGATCAAGCTTTCTCTTGCCTCAGCGGAAACCCCATCGACGATTGCTGGCGGTGCGACCCGAATTGGGGGGCGAATCGGCAGCGGCTGGCCGACTGCGGCATCGGGTTCGGCCACGACGCCATCGGTGGCAAAGGCGGGAAGATCTACCTGGTCACCGACTCGTCGGATTTGGATGCGGAGAACCCGAAGCCGGGGAGTCTCCGCCACGCCGTGATCCAATTCGAACCCCTCTGGATCATCTTCTCCGCCGATATGACCATTACGCTCAAACACGAACTGATCATCAACAGCTACAAAACCATCGACGGCCGTGGCGCGAACGTCCACATCACCGGCGGCGGCTGTATCACCATCCAATACGTGTCCAACATCATCATCCACAACATCCATGTGCACCACTGTAAACCCTCTGGCAATGCTAACATAAGATCGACCCCAACCCACGTGGGTCATCGAGGACTCTCAGACGGAGACGGGATTTCCATATTCAGCTCGAGAAAGATCTGGATCGATCACTGCTCACTTTCATATTGCACGGACGGACTGATAGACGCGATAATGGGATCGACAGGAATAACAATATCAAACAGCTACTTCTCGCACCACGATGAGGTGATGTTGCTCGGACATGATGACCGGTACGTGCTCGACTCGGGGATGCAGGTGACCATAGCCTTCAACCACTTTGGTGAGGCTCTAGTCCAACGCATGCCAAGATGTAGACATGGCTACATTCATGTGGTCAACAATGATTTTACAGCTTGGGAAATGTATGCCATTGGCGGCAGTGCTCGGCCCACTATTAACAGTCAGGGTAACCGCTACACTGCTCCTGTGAACCCTAATGCCAAAGAGGTGACGAGACGTTTAGACGCGGCGGAGACAGACTGGGCGGGCTGGAATTGGCGGACCGACGGCGATATTTTGGTGAACGGCGCGTTTTTTGTGCCGTCCGGTGCCGGACTTAGCACTCAGTACGGCAAGGCCTCCAGTGTCGAGCCCAAGTCGGTGGCTATTATCAGTCAGCTCACTATGAACGCTGGCGTTTTGGGCGCCCCCAGATATAATACTGGTCAAGGGATTGTATATCCCGGATTTAGCGGTAGTAATAACGGTGGCAATGGTAATGGCGGAGGATATGATGGTAACACTGTCATAAATAATAGTCCAATTTATGGAAGTGGTGGTAGAAGTGATGAAGACTTCTATGGAATGATATTTAATGCAAGCGGTTATAGAAAAGTCTCAGGCCTCTTCCTTCAAGATGACGTTGAGATGATCACTCGCATCCCTCTTTTCCACCATCAACAGGTAGACCTCTTCTTCTGGCACTATGACAAACGAGGTATATACACTCTGTTAAGAGTGGCTACAAACTGGCGCAAGCGTCAGCTCATGAAGACTTTTCATCGTCAAACCATGATTCGAAGGAAATGTGGAGCACACTTTGGGGCTTGGTAA 1644 50.55 MFPVLSILFIWMSGSIFRVDSASFNLTLPHQHPDPDSVADELQRSVNSSVWRRKMLSSESKDQAFSCLSGNPIDDCWRCDPNWGANRQRLADCGIGFGHDAIGGKGGKIYLVTDSSDLDAENPKPGSLRHAVIQFEPLWIIFSADMTITLKHELIINSYKTIDGRGANVHITGGGCITIQYVSNIIIHNIHVHHCKPSGNANIRSTPTHVGHRGLSDGDGISIFSSRKIWIDHCSLSYCTDGLIDAIMGSTGITISNSYFSHHDEVMLLGHDDRYVLDSGMQVTIAFNHFGEALVQRMPRCRHGYIHVVNNDFTAWEMYAIGGSARPTINSQGNRYTAPVNPNAKEVTRRLDAAETDWAGWNWRTDGDILVNGAFFVPSGAGLSTQYGKASSVEPKSVAIISQLTMNAGVLGAPRYNTGQGIVYPGFSGSNNGGNGNGGGYDGNTVINNSPIYGSGGRSDEDFYGMIFNASGYRKVSGLFLQDDVEMITRIPLFHHQQVDLFFWHYDKRGIYTLLRVATNWRKRQLMKTFHRQTMIRRKCGAHFGAW 547
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 75259090 75268007 - Hsped.01g10560.1 Hepe01g1056 560166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe01g1056 547 SUPERFAMILY Pectin lyase-like 60 388 IPR011050 -
Hepe01g1056 547 PRINTS Pollen allergen Amb family signature 153 169 IPR018082 -
Hepe01g1056 547 PRINTS Pollen allergen Amb family signature 361 385 IPR018082 -
Hepe01g1056 547 PRINTS Pollen allergen Amb family signature 117 142 IPR018082 -
Hepe01g1056 547 PRINTS Pollen allergen Amb family signature 319 338 IPR018082 -
Hepe01g1056 547 PRINTS Pollen allergen Amb family signature 93 110 IPR018082 -
Hepe01g1056 547 PRINTS Pollen allergen Amb family signature 217 238 IPR018082 -
Hepe01g1056 547 PRINTS Pollen allergen Amb family signature 390 413 IPR018082 -
Hepe01g1056 547 PRINTS Pollen allergen Amb family signature 297 316 IPR018082 -
Hepe01g1056 547 Pfam Pectate lyase 152 331 IPR002022 -
Hepe01g1056 547 Gene3D - 70 412 IPR012334 -
Hepe01g1056 547 SMART amb_all 145 342 IPR002022 -
Hepe01g1056 547 PANTHER PECTATE LYASE 18-RELATED 28 413 IPR045032 GO:0030570(InterPro)
Hepe01g1056 547 FunFam Pectate lyase 70 412 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g1056 Hepe-Chr1:75259090 Hepe05g1732 Hepe-Chr5:67554278 4.95e-191 dispersed
Hepe01g1056 Hepe-Chr1:75259090 Hepe02g2922 Hepe-Chr2:78289569 5.28e-224 wgd
Hepe01g1056 Hepe-Chr1:75259090 Hepe04g0960 Hepe-Chr4:63987509 1.41e-219 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe01g1056 K01728 - csv:101205739 843.573