Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe01g1123 ATGAACTCAGTTCCCTTCCTTGTCCTTCTCCTTCTCTCTCTACGCCTCGCCGGATCTTCCGATTCTTCTCCGCCGTCCGCCGCTCTCTGTAAATCCACTCTCTACCCTAAGCTCTGCCGCTCCATTCTCTCCTCCATCCGATTCTCCCCCTCCGATCCCTACGGCTACGGAAAATTCTCCGTCAAGACGTGTCTCAAACAGGCGATCAAAATGTCGAGCGTAATCGGCGACTATCTCGACCGAGGACGTGATTCGAGGCTGAATCGGCGGGAGGCCGGCGCTCTGGCCGACTGCAGAGAGCTTTCCGATTTGAATGTGGAGTTTCTCCGGTCGATTGAGGGCGTATTGGAGACGGCGGACGGCGTCGATGAGGAACTGGTGGAGCGCGTCGAGAGTATTTTGAGTGCGATCTTGACGAACGGACAGACTTGTATCGACGGATTGGTGGAATCGAGGAGTAGTTTGGGGAATGCGCTATCGGTGCCGCTGTCGAGCGCCGGACAGCTGTACAGTGTGTCGTTGGGATTGGTTGCGAACTCGCTGTCGCGGCGGTGGAAGAAGCGGCGGCAGAGTTTTCCGGTGGCTGGGCGGAGCAGAGAGCGATTGAACACGCTGATCAAGGGACTGCATAAAATGGGGTCATGCAACCAATCCACAATGTGCTCAGGAAGGAAGCGCTTGTTAACTGATTTAGGCAGCACAGGAATTTTCATCAACAACACAGTGGTTGTTAGCTCAACTGGTGCTGACAACTTCACATCAATTGGAGATGCAATTGCATTTGCTCCCAACAATTCAATGCCTGAAGATGGCTACTTTGTTATATATGTTAGAGAAGGATACTACGAAGAATACGTTGTCGTCCCCAAATACAAAACCAATGTAATGCTCATCGGGGATGGCATTAACCGAACCGTCATCACCGGGAACCATAGCGTCGTCGATGGTTGGACGACTTATAATTCTTCTACCTTTACTGTTTGTGGGGATGGATTTGTTGCAATAGACGTGACATTCAGGAACACAGCAGGGCCAGAGAAGCACCAAGCAGTGGCATTGAGAAACAGTGCAGATCTCTCAACATTCTACCGCTGTAGTTTTGAAGGCTATCAAGACACTCTCTATGTACATTCCCTAAGGCAATTCTACAGAGAATGTGACATTTATGGCACTGTGGATTTCATTTTTGGCAATGCAGCTGCAGTTTTCCAACAATGCAATCTCTACGCCAGAAAGCCACTCCCGAACCAAAAGAACGCCTTCACGGCGCAGGGCCGAACCGATCCGAATCAAAACACTGGCATCTCGATCCACAACTGCACCGTCACGGCCGCCCCCGACTGGGTAATCGATTCGAATTCAACGACGACCACGAACTATCTGGGGCGGCCGTGGAAGGCGTACTCGAGGACAGTGTATATGCAGTCTTACATTGGGGATTTGATCAGCCCTGTGGGGTGGTTGGAGTGGAATGGAACTGCAGGGTTGGACACATTGTATTATGGGGAGTTTGAGAATTATGGAGAAGGAGCTAACACAAGTATGAGGGTTAATTGGGCTGGATATAGCTTGATGAATCTTACACAGGCTATGAATTTTACTGTCTTTAACTTCACTATGGGAGATACTTGGCTGCCTTACACTGATATCCCCTTCTCTGCAGGTTTGCTATGA 1674 50.24 MNSVPFLVLLLLSLRLAGSSDSSPPSAALCKSTLYPKLCRSILSSIRFSPSDPYGYGKFSVKTCLKQAIKMSSVIGDYLDRGRDSRLNRREAGALADCRELSDLNVEFLRSIEGVLETADGVDEELVERVESILSAILTNGQTCIDGLVESRSSLGNALSVPLSSAGQLYSVSLGLVANSLSRRWKKRRQSFPVAGRSRERLNTLIKGLHKMGSCNQSTMCSGRKRLLTDLGSTGIFINNTVVVSSTGADNFTSIGDAIAFAPNNSMPEDGYFVIYVREGYYEEYVVVPKYKTNVMLIGDGINRTVITGNHSVVDGWTTYNSSTFTVCGDGFVAIDVTFRNTAGPEKHQAVALRNSADLSTFYRCSFEGYQDTLYVHSLRQFYRECDIYGTVDFIFGNAAAVFQQCNLYARKPLPNQKNAFTAQGRTDPNQNTGISIHNCTVTAAPDWVIDSNSTTTTNYLGRPWKAYSRTVYMQSYIGDLISPVGWLEWNGTAGLDTLYYGEFENYGEGANTSMRVNWAGYSLMNLTQAMNFTVFNFTMGDTWLPYTDIPFSAGLL 557
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 76124735 76131779 - Hsped.01g11230.1 Hepe01g1123 560233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe01g1123 557 Gene3D Invertase/pectin methylesterase inhibitor family protein 27 180 IPR035513 -
Hepe01g1123 557 SMART PMEI_2 21 176 IPR006501 GO:0004857(InterPro)
Hepe01g1123 557 PANTHER PECTINESTERASE 16 546 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Hepe01g1123 557 CDD PMEI-like_3 29 179 - -
Hepe01g1123 557 Pfam Plant invertase/pectin methylesterase inhibitor 28 174 IPR006501 GO:0004857(InterPro)
Hepe01g1123 557 FunFam Pectinesterase 236 556 - -
Hepe01g1123 557 SUPERFAMILY Pectin lyase-like 237 555 IPR011050 -
Hepe01g1123 557 ProSitePatterns Pectinesterase signature 2. 388 397 IPR033131 -
Hepe01g1123 557 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 28 178 IPR035513 -
Hepe01g1123 557 Gene3D - 236 556 IPR012334 -
Hepe01g1123 557 Pfam Pectinesterase 242 542 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g1123 Hepe-Chr1:76124735 Hepe03g1874 Hepe-Chr3:75735245 6.36e-172 dispersed
Hepe01g1123 Hepe-Chr1:76124735 Hepe02g2634 Hepe-Chr2:73797441 1.24e-114 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe01g1123 K01051 - csv:101206112 986.867