Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe01g1148 ATGGAGAACGGGAAGAATTACGCCATGGAAGAAATTCTACTGGTGAAGCAGAAGGAAAACAATCTCTTTTCAACATCGAGGGATACTTTCTTCGAAGAGGTCAAGAGTGTGGGATACTTGGCGGCGCCGATGGTCGCCGTCACTCTCTCGCAGTATCTGTTGCAGATGATCACGATGATGATGGTCGGTCATCTCGGCGCACTTGCTCTCTCCAGCAGCGCCATAGCCATTTCCATTGCTGGAGTTACAGGCTTCAGTGTTCTCTTAGGCTTGTCCAGTGCCCTCGAAACTCTATGTGGACAAGCTTATGGAGCTCAGCAATATCAAAAACTAGGAGTTCAGACTTACACTGGTATATTTTGCATCTTCTTAATTTGCATTCCTCTGTCCCTATCTTGGGTCTTCTTGGAAAAGCTACTTGTTTTCCTCGGTCAAGATCCTCTGATTTCACACGAAGCTGGGAAATTCATTGTTTGGTTGATTCCTGCGCTCTTCGCTTGCGCATTTCTTCAACCACTGGTGAGATATTTCCAGGCACAAAGTTTAGTAATCCCCATGGTCATTTGCTCTTGTGTCACTCTATGCTTCCACATACCATTTTGTTGGTTCATGGTGTACAGGGCTGGACTTCGAAATCTGGGAGGAGCACTAGCTATGAGTGTGTCATTTTGGCTGAATGTGATTTTGCTAGCATTATATATGATATTCTCGCCTAAATGTGAGAAAACTCGTGGAGTCATTTCTATGGAGCTGTTTCGAGGAATTCGAGAGTTCTTTAGCTTGGCAATTCCTTCCGCGGTGATGGTTTGCCTTGAATGGTGGTCATTTGAGCTGCTTATCTTACTATCAGGGCTGTTGCCGAATCCGGAGCTTGAAACTTCAGTTTTATCTGTTTGTCTCAATACAATTGCTACCCTTTATTCAATACCATATGGGCTTGGTGCTGCAGGAAGCACAAGAGTTTCTAATGAACTAGGTGCTGGGAATCCACAAGCAGCTCGTCGAGCAACAACTGTTGTTTTACTCCTCGCCATCTTGGAAACCTCAATATTGAGCACAACCCTTTTCGCTCTTCGTCACGTCTTTGGTTATACTTTCAGCAACGAGGAGGATGTTGTGGCTTATGTGGCCTCTATGGCACCTCTGGTTTGCTTATCCGTGATATTGGACAGCGTACAGGGAGTTCTTTCAGGCATTGCCAGAGGATGTGGATGGCAGCACATTGGTGCTTATGTAAACTTGGGGGCCTTCTATCTTTGTGGGATTCCAGTTGCTGCCATTCTTTCTTTCTGGTTTCACCTGAGAGGAAGAGGCCTTTGGATTGGCATACAAACTGGGGCTTTTGTGCAAACCATGTTGCTCTCCTTCATTACAAGTCGAATAAATTGGGAAGAGCAGGCAAGAAGGGCAGGTGAGAGGCTTTCTATTTCTGAGGGCAGTTATTAA 1446 45.5 MENGKNYAMEEILLVKQKENNLFSTSRDTFFEEVKSVGYLAAPMVAVTLSQYLLQMITMMMVGHLGALALSSSAIAISIAGVTGFSVLLGLSSALETLCGQAYGAQQYQKLGVQTYTGIFCIFLICIPLSLSWVFLEKLLVFLGQDPLISHEAGKFIVWLIPALFACAFLQPLVRYFQAQSLVIPMVICSCVTLCFHIPFCWFMVYRAGLRNLGGALAMSVSFWLNVILLALYMIFSPKCEKTRGVISMELFRGIREFFSLAIPSAVMVCLEWWSFELLILLSGLLPNPELETSVLSVCLNTIATLYSIPYGLGAAGSTRVSNELGAGNPQAARRATTVVLLLAILETSILSTTLFALRHVFGYTFSNEEDVVAYVASMAPLVCLSVILDSVQGVLSGIARGCGWQHIGAYVNLGAFYLCGIPVAAILSFWFHLRGRGLWIGIQTGAFVQTMLLSFITSRINWEEQARRAGERLSISEGSY 481
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 76602796 76608782 + Hsped.01g11480.1 Hepe01g1148 560258

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe01g1148 481 CDD MATE_eukaryotic 33 469 IPR045069 GO:0042910(InterPro)|GO:1990961(InterPro)
Hepe01g1148 481 PANTHER MULTIDRUG RESISTANCE PROTEIN 26 466 - GO:0016020(PANTHER)|GO:0022857(PANTHER)
Hepe01g1148 481 NCBIfam MATE family efflux transporter 43 440 IPR002528 GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0042910(InterPro)|GO:0055085(InterPro)
Hepe01g1148 481 Pfam MatE 264 427 IPR002528 GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0042910(InterPro)|GO:0055085(InterPro)
Hepe01g1148 481 Pfam MatE 43 202 IPR002528 GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0042910(InterPro)|GO:0055085(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe01g1148 K03327 - - csv:101213643 780.015
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g1148 Hepe-Chr1:76602796 Hepe01g1150 Hepe-Chr1:76626000 1.97e-206 dispersed
Hepe01g1148 Hepe-Chr1:76602796 Hepe01g1149 Hepe-Chr1:76613006 1.51e-189 tandem
Hepe09g0239 Hepe-Chr9:2076335 Hepe01g1148 Hepe-Chr1:76602796 4.59e-153 transposed
Hepe01g1148 Hepe-Chr1:76602796 Hepe02g2679 Hepe-Chr2:74488224 1.07e-192 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g388 . . . . . . . . . . . . . . . . . Bhi07g01251 . . Lac13g0551 Hepe01g1148 . . . . . . . . . . . . Cone9ag0440 . Csa05g02661 Chy10g00269 Cme10g00210 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001043 2 6 4 2 3 1 0 1 1 2 0 1 2 3 3 2 1 3 3 1 3 1 4 6 6 3 3 7 5 3 82