Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe01g1164 ATGACTTCCGGTGGCGGCGGCGAGGTTGAAGTCAAGGGAGTGTTCATAGGAGCTGGCTGTAACAGAATAGTGAACAACGTTTCTTGGGGAGCCTGTGATTTAGTGGCTTTTGGCGCTCAAAACGCCGTCGCCATCTTCTCTCCCAAGTCTGCACAAATTTTGACTACGCTTCCCGGTCACAATGCCTCTGTGAACTGCACTCATTGGCTTCCAAGTAACAAGTTTGCGTTTAGAGCCAAGCATTTGAAGTGTCATTATCTGCTTTCTGGTGACTCTGATGGTGCCATTCATTTATGGGAGTTGTCTCTTCTGGACCAGAAGTGGAGAAATGTTTTACAACTACCAAAATCACACAAGAAAGGCATCACATGTATTACTGCACATGTAATTTCTGAAACGGTGGCAATTGTTGCGTCTGCTTCTTCAGATGGTTCAGTTTGTGTTTGGGAGGTGGCTTTTCCTTCTACCAATGAAGGTGATTGTACGTTGGTGTTGCTTGACACGCTCTTGGTTGGTTCAAAATCTATGGTGGCACTTTCATTAGCAGAATTGCCTGGAAATGCCAGTCATTTGGTCCTGGCAATGGGAGGTTTGGATAATAAGATTCATCTATATTGTGGGAAGAGAACTGGAGAGTTTGTTAAGGCGTGTGAGTTAAAAGGACATACGGATTGGATTAGAAGTTTGGACTTCTCTTTGCCCATGTGCAAAAATGGAGAAGCAAATAGCATTATGCTTGTAAGTTCATCTCAGGACAGAGGCATACGCATATGGAAGATGGCTCTTCATGGTTCTTTAGCCGACATGAATGGTGGATGCAAAACAGAGGAAATAAGTTTAACATCTTATATACAAGGTCCTATATTTACTGCCGGACCATCAACTTACCAGGTATCATTGGAATCTCTTTTGATTGGACATGAGGATTGGGTATATTCAGTCCAATGGAAGCCTCCTTCAGCTGCTGAAACAGAAGAGTTTCCCTGCTATCAATCTGAAAGCATCTTATCTGCATCTATGGACAAGACAATGATGATCTGGAAACCTGAAAAGACTTCTGGGATCTGGATGAATGTGGTTACTGTTGGAGAGTTGAGTCATTGTGCTTTAGGGTTTTATGGTGGGCATTGGAGTCCTAATGGAGATTCAATTTTAGCACATGGTTATGGTGGGTCTTTTCATCTCTGGAGAAATGTTGGTATCAGTTCAGATAACTGGAAACCTCAAAAGGTTCCCTCAGGACATTTTGCTGCTGTCATGGATATTTCATGGGCCAGATCTGGTGATTATTTTATTTCAGTCAGCCATGACCAGACAACTCGAATTTTCGCTCCCTGGAAAAATATCAATTCTCTTGAAGGAGGTTCTTGGCATGAAATAGCTCGACCTCAAGTCCACGGGCATGATATTAATTGTGTCACTGTAATACAAGGAAAGGGCAACCATCGCTTTGTCAGTGGAGCTGAAGAGAAAGTTGCTAGAGTCTTTGAAGCTCCATTATCTTTTCTGAAGACATTGAGTCATGCCACACTACAGAATTTTATGGCCACGGAAGATCATCTTGTGGATGTTCAGATTTTGGGTGCTAATATGTCGGCTCTTGGGCTTTCACAGAAACCTATTTATGTTCAATCTGCTGATAAGACTCCGGACAGGGGTGGAAATGAAGGTTTTGACACCCTTGAAACCATTCCCGATGCAATTCCTATCGCTCTGACTGAACCTCCCATTGAAGATCAACTGGCATGGCATACACTTTGGCCAGAGTCGCACAAACTTTATGGTCATGGGAATGAGCTATTTTCTCTATGTTGTGATCACAAGGGGAAGCTTGTTGCTTCATCCTGTAAGGCCCAGACAGCATCAGTAGCAGAAATATGGCTCTGGGAAGTTGGTTCGTGGAAGGCAGTCGGTCGTTTGCAATCTCACAGCTTAACAATAACACAGTTGGAGTTTTCGCATGATGATAGTATGCTATTGGCAGTCTCAAGGGATCGTCAATTTTCTGTTTTTAAAATCCATAGAACAGGCTCTGATGAAATCCACCATGAGCTTATATCAAGGCAGGAGGCACACAGAAGAATCATATGGTCATGTTCTTGGAACCCAAATGGTCATGAGTTTGCAACAGGCTCTAGGGATAAGACTGTGAAGATATGGGCTGTGACAGCTGAATCTTCAGTTAAGCAGCTAACAACGTTGTCACAGTTCAAATCTAGTATCACCGCTTTATCGTGGGTCGGTCTTGATCCCGAGAGCAATGGACTCCTTGCAGTTGGAATGGAAAGTGGCCTCCTTGAGTTGTGGAGTTTATCTATCAAAAGAACAGATAATGTTAGCTCGAATGTAGTTGCTTCGGTCGTTATACGTCTTGATCCTTTTGTGTGCCATGTTTCGTCGGTCAACCGTTTGGCATGGAGGGAACCGGAGAAGAGTGAAGAGTGCAGGAAGCTGCAGCTTGCTTCCTGTGGGGCTGACCACTGTGTTAGAGTGTTTGAGGTAAATGTTTCTTCTGTATGA 2520 43.69 MTSGGGGEVEVKGVFIGAGCNRIVNNVSWGACDLVAFGAQNAVAIFSPKSAQILTTLPGHNASVNCTHWLPSNKFAFRAKHLKCHYLLSGDSDGAIHLWELSLLDQKWRNVLQLPKSHKKGITCITAHVISETVAIVASASSDGSVCVWEVAFPSTNEGDCTLVLLDTLLVGSKSMVALSLAELPGNASHLVLAMGGLDNKIHLYCGKRTGEFVKACELKGHTDWIRSLDFSLPMCKNGEANSIMLVSSSQDRGIRIWKMALHGSLADMNGGCKTEEISLTSYIQGPIFTAGPSTYQVSLESLLIGHEDWVYSVQWKPPSAAETEEFPCYQSESILSASMDKTMMIWKPEKTSGIWMNVVTVGELSHCALGFYGGHWSPNGDSILAHGYGGSFHLWRNVGISSDNWKPQKVPSGHFAAVMDISWARSGDYFISVSHDQTTRIFAPWKNINSLEGGSWHEIARPQVHGHDINCVTVIQGKGNHRFVSGAEEKVARVFEAPLSFLKTLSHATLQNFMATEDHLVDVQILGANMSALGLSQKPIYVQSADKTPDRGGNEGFDTLETIPDAIPIALTEPPIEDQLAWHTLWPESHKLYGHGNELFSLCCDHKGKLVASSCKAQTASVAEIWLWEVGSWKAVGRLQSHSLTITQLEFSHDDSMLLAVSRDRQFSVFKIHRTGSDEIHHELISRQEAHRRIIWSCSWNPNGHEFATGSRDKTVKIWAVTAESSVKQLTTLSQFKSSITALSWVGLDPESNGLLAVGMESGLLELWSLSIKRTDNVSSNVVASVVIRLDPFVCHVSSVNRLAWREPEKSEECRKLQLASCGADHCVRVFEVNVSSV 839
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 76759850 76767309 - Hsped.01g11640.1 Hepe01g1164 560274

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe01g1164 839 PRINTS G protein beta WD-40 repeat signature 708 722 IPR020472 -
Hepe01g1164 839 PRINTS G protein beta WD-40 repeat signature 137 151 IPR020472 -
Hepe01g1164 839 PRINTS G protein beta WD-40 repeat signature 246 260 IPR020472 -
Hepe01g1164 839 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 689 720 - -
Hepe01g1164 839 ProSiteProfiles Trp-Asp (WD) repeats profile. 219 260 IPR001680 GO:0005515(InterPro)
Hepe01g1164 839 SUPERFAMILY WD40 repeat-like 686 834 IPR036322 GO:0005515(InterPro)
Hepe01g1164 839 SUPERFAMILY WD40 repeat-like 192 727 IPR036322 GO:0005515(InterPro)
Hepe01g1164 839 SUPERFAMILY WD40 repeat-like 33 348 IPR036322 GO:0005515(InterPro)
Hepe01g1164 839 Gene3D - 406 510 IPR015943 GO:0005515(InterPro)
Hepe01g1164 839 Gene3D - 679 839 IPR015943 GO:0005515(InterPro)
Hepe01g1164 839 SMART WD40_4 727 770 IPR001680 GO:0005515(InterPro)
Hepe01g1164 839 SMART WD40_4 50 100 IPR001680 GO:0005515(InterPro)
Hepe01g1164 839 SMART WD40_4 405 444 IPR001680 GO:0005515(InterPro)
Hepe01g1164 839 SMART WD40_4 682 721 IPR001680 GO:0005515(InterPro)
Hepe01g1164 839 SMART WD40_4 586 630 IPR001680 GO:0005515(InterPro)
Hepe01g1164 839 SMART WD40_4 358 397 IPR001680 GO:0005515(InterPro)
Hepe01g1164 839 SMART WD40_4 456 497 IPR001680 GO:0005515(InterPro)
Hepe01g1164 839 SMART WD40_4 212 259 IPR001680 GO:0005515(InterPro)
Hepe01g1164 839 SMART WD40_4 784 833 IPR001680 GO:0005515(InterPro)
Hepe01g1164 839 SMART WD40_4 107 150 IPR001680 GO:0005515(InterPro)
Hepe01g1164 839 SMART WD40_4 297 348 IPR001680 GO:0005515(InterPro)
Hepe01g1164 839 SMART WD40_4 633 672 IPR001680 GO:0005515(InterPro)
Hepe01g1164 839 Gene3D - 24 282 IPR015943 GO:0005515(InterPro)
Hepe01g1164 839 PANTHER ELONGATOR COMPLEX PROTEIN 2 13 836 IPR037289 GO:0002098(InterPro)|GO:0033588(InterPro)
Hepe01g1164 839 Gene3D - 577 678 IPR015943 GO:0005515(InterPro)
Hepe01g1164 839 FunFam Elongator acetyltransferase complex subunit 2 367 679 - -
Hepe01g1164 839 Gene3D - 287 405 IPR015943 GO:0005515(InterPro)
Hepe01g1164 839 ProSiteProfiles Trp-Asp (WD) repeats profile. 689 730 IPR001680 GO:0005515(InterPro)
Hepe01g1164 839 Pfam WD domain, G-beta repeat 116 149 IPR001680 GO:0005515(InterPro)
Hepe01g1164 839 Pfam WD domain, G-beta repeat 304 347 IPR001680 GO:0005515(InterPro)
Hepe01g1164 839 Pfam WD domain, G-beta repeat 53 99 IPR001680 GO:0005515(InterPro)
Hepe01g1164 839 Pfam WD domain, G-beta repeat 406 443 IPR001680 GO:0005515(InterPro)
Hepe01g1164 839 Pfam WD domain, G-beta repeat 686 720 IPR001680 GO:0005515(InterPro)
Hepe01g1164 839 Pfam WD domain, G-beta repeat 635 671 IPR001680 GO:0005515(InterPro)
Hepe01g1164 839 Pfam WD domain, G-beta repeat 218 258 IPR001680 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe01g1164 K11374 - - csv:101209018 1558.89
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g358 . . . . . . Bma14g01910 . . Cmo18g01004 . Cma18g00995 . Car18g00918 Sed06g1949 Cpe09g00322 Cpe01g01327 Bhi07g01286 Tan04g0812 Cmetu10g0150 Lac13g0532 Hepe01g1164 . . Cla05g02273 Cam05g2443 Cec05g2464 Cco05g2508 Clacu05g2438 Cmu05g2301 Cre05g2419 . . Cone6ag0423 Cone9ag0445 Lsi04g00222 Csa05g02643 Chy10g01176 Cme10g00228 . . Bda07g01725 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011732 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 0 1 1 1 1 1 1 1 1 30