Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe01g1172 ATGTTAACCACGTTTACGGCAATTCATAACATCGACGGTGGTGGAGGACCCGTCGTCGCCGTTCCCGCCATGGCTGCTTCTGCTCCGGTGAACTCGTCAATGGAATCATGTTCCAGAATCATCGCCTTGGAATCTCCTATTCTGATATTTGTTTTCTTTCACAAAGCTATTCGCGCTGAGCTTGATCACTTCCATCGCGACGCCATGGAATTCGCCACCAACCAGCAAACTGGCGGCGATATTGGCCCCTTGTTACACCGCTACCACTTCCTTCGCGCTGTTTATAAGCATCACTGTAACGCTGAGGACGAGGTCATCTTCCCGGCTCTAGATCTGCGAGTGAAAAATGTGGCAAGTGCTTATTTCCTTGAACATGAAGGGGAAAGTGTTCTGTTTTGTCAATTGCTTGAGCTTCTGAATTCGAACGCTTTGGAGGAAGGAAGCTATAAGAGGGAGCTGTCATCTCGTGCCAGAGCTCTTCAGATATCAATATGCCAGCATATGTTCAAGGAGGAGGAACAGGTGTTTCCGTTACTTACTGAAAAGTTCTCTTTTGAAGAACAGGCATCATTAGTATGGAAATTTCTTTGCAGTATACCTATTAATATGCTGGAAGTCTTTCTTCCGTGGCTTTCTTCCTCTATATCTCCAGATGAACATCAGATTATGTGCAAATGCTTGAGCAAAATTATCCCCGATCAAAAGCTTCTTCAGAAGGTAATATTTTCCTGGATGGAGGATGCAAGAATTCCTCGTGCCAACCAAAGTTCGTATGACGGAAATTTAGAGTTCCACTGTCTACCCTCTCAGGTCTGTGATCTTATACGTAGGCCAGAGAAGGGGAACGATACTTCTGAATCAACTAGAACTGGTAAAAGGAAATACATGGAGCAAAGTAATTTAACCTATTCTACTGTTTCAGTTGCTTGTCCCATCAACGAAATATTACATTGGCATAATGCTATAAAAAAAGAACTAAATAGCATAGCTGAGGCAGCTAGAGACCTACCATTGTCTTCTGATTTTTCTGAGTTGTCTACATTTAAGGAGAGGCTGCAGTTTATTGCAGAAGTCTGCATCTTCCACTGCATTGCTGAGGATAAAGTTATATTCCCTGCTGTAGATGCTGAACTATCTTTTGCTGATCAGCATGCAGAAGAAGAAATTCAATTTGATAAGCTTAGGCACTTGATAGAAAGTATCCAAGCTGGTAGAGCTAAATATTCTTCTGCTGAAATTCATAAAAGTTTAAGTTCTCATGCTGATCAAATTATCAAGACTATCGAGAAGCACTTTCATGATGAGGAAACGCATGTTCTTCCACTTGCTCGGAAGCATTTTGGACCCCAAAGGCAGCGAGAACTTCTGTATCACAGCTTATGCATAATGCCCTTGAAGTGGATAGAGCGTGTCTTACCTTGGTTGGTAGAAACACTTACTGAAGAAGAAGCAAGATCTTTTCTTCAGAATATGCAAATGGCAGCTCCAGTGTCAGATCATGCACTCGTTACACTGTTTTCTGGTTGGGCATGCAAAGGTCATCCCAGGAGCATTTGTTTTTCTGCAGGTGCTATTAGCCATTGTCCTGAACGGATATTGACTGGAGATGAAGAATCATGCTCCTCCTCTTCTGCCAATGAAAAACCTTCATGCAATCAGGCTACTGAGTGTGCCAGGACATCCAAGTGTGGGAAGGCAGTATTCCATGGAGACTTAAATGGCCGAGTTCCTTTGAAAAACCCAAGCAAAAAAGTTCATTTCACTTGTGTAAAACTATCTGCTTGTGTCCCTGGGTTAGGAGTGGATGACAATAATTTAGGAATGAGATCTCTGGCAGCAGCAAAATCACTGCGTTCTTTGTGTTTTGGTCCCTATGCTCCTTCTCTCAACTCAAGTCTTTTTAGTCTGGAAAATGATCCAATCTCTTGTGGCAGTGGTTCTAAGTCACGGCCTATTGATAACATATTTAAATTTCATAAAGCAATAAGCAAAGACTTGGAGTATTTGGATAATGAATCCGTGAATCTCGGTGATTGCGATGATACTTTCTTTAGGCAATTTTGTGGTAGGTTTCATCTGTTGTGGGGTCTATATAAAGCTCATAGTAATGCAGAGGATGATATAGTATTTCCTGCATTAGAATCAAAAGAAACTCTTCACAATGTGAGCCACTCTTATACATTAGACCACAAACATGAGGAAGAGCTATTTGAAGGTATTTCTACTGCACTTTCTAAGCTGACAAATCTTCGCAGAGACTTGAATAGTAAGAAAAAGTGTAACTATTCAAATTGGACGAAGTCTCATACCTCTGATAATAATGATACTGTGAGAATGAATATTGAGCTGGCAACGAAGCTCCAGGGCATGTGTAGATCAATTAGAGTGACACTCGACCAACATATTTTCCGTGAGGAATCGGAATTGTTGCCATTGTTCCATACATATTTTTCTGTGGAAGAACAGGATAAAATTGTTGGTAGAATAATTGGTACTACAGGTGCTGAGGTCCTTCAATCAATGTTACCTTGGGTAACTTCTGCACTTACTCAGGAGGAGCAAAATAGGATGATGGATACATTGAAGCAGGCAACCAGAAATACAATGTTTAGTGACTGGCTAAATGAATGGTGGGAAGGACCTGCTACATCTCCACTTTTTTTGGAATCTGTCAGTCATATATCTGGAGGTTCTGATTCCCATGGTGTCTGTGACCAAAAAAATGATTCGGTTTTCAAGCCTGGATGGAAAGAGATTTTTAGGATGAACGAAAATGAACTTGAATCAGAAATAAGAAAGGTTGCCCGAGATTCAACCATTGACCCTAGGAGAAAAGATTATCTTATCCAGAACTTGATGACCAGTCGCTGGATAGCTTCTCAGCAGATGCTACCCCAAGCAACCACAGGTGAAAACTCAGATGCAAGACAACTGATTGCAAGTGCCCCATCATTTCGTGATCCTAAGAAACAGATTTTTGGGTGTGAGCATTATAAAAGAAATTGTAAACTGCTTGCAACTTGTTGTGGCAAGTTGTTTACTTGTAGTTTCTGTCATGATAAAGTCAGTGATCATCCAATGGACAGGAAGGCTTCAACGGAAATGATGTGTATGCGCTGCCTCAAAGTGCAGCCTATTGGATCTGTTTGCACAACACCATCCTGTGGTGGTCTCTCTATGGCAAAGTACTACTGTAGTATTTGCAAACTTTTTGACGATGAAAGGGAAGTCTATCATTGTCCTTTCTGCAATTTATGTCGTCTTGGGAAGGGACTTGGTACTGATTTTTTTCATTGTATGACATGCAATTGTTGTTTGGCAATGAAGTTGGTTGATCACAAGTGCCAAGAGAGGGGCCTAGAAACAAATTGTCCTATCTGCTGTGATTTTTTGTTCACATCTAGTGAAAGTGTTAGAGCTCTCCCTTGTGGCCATTTCATGCATTCAGCTTGTTTCCAGGCTTACACTTGTAGCCACTACATATGTCCAATATGTAGCAAGTCCTTAGGAGATATGACGGTATACTTCGGCATGCTCGACGCATTACTGGCATTAGAGGTACTCCCTGAAGAATACAGGGAACGCTGTCAGGATATATTGTGCAATGACTGCTCCAAGAAGGGGAAAGCTCGCTTCCACTGGCTGTACCATAAATGTAGAAATTGTGGATCTTACAATACCAAGGTGATTAAGGTTAGCTCAAGTTCCTGCTCAACATTGAATTAG 3726 41.52 MLTTFTAIHNIDGGGGPVVAVPAMAASAPVNSSMESCSRIIALESPILIFVFFHKAIRAELDHFHRDAMEFATNQQTGGDIGPLLHRYHFLRAVYKHHCNAEDEVIFPALDLRVKNVASAYFLEHEGESVLFCQLLELLNSNALEEGSYKRELSSRARALQISICQHMFKEEEQVFPLLTEKFSFEEQASLVWKFLCSIPINMLEVFLPWLSSSISPDEHQIMCKCLSKIIPDQKLLQKVIFSWMEDARIPRANQSSYDGNLEFHCLPSQVCDLIRRPEKGNDTSESTRTGKRKYMEQSNLTYSTVSVACPINEILHWHNAIKKELNSIAEAARDLPLSSDFSELSTFKERLQFIAEVCIFHCIAEDKVIFPAVDAELSFADQHAEEEIQFDKLRHLIESIQAGRAKYSSAEIHKSLSSHADQIIKTIEKHFHDEETHVLPLARKHFGPQRQRELLYHSLCIMPLKWIERVLPWLVETLTEEEARSFLQNMQMAAPVSDHALVTLFSGWACKGHPRSICFSAGAISHCPERILTGDEESCSSSSANEKPSCNQATECARTSKCGKAVFHGDLNGRVPLKNPSKKVHFTCVKLSACVPGLGVDDNNLGMRSLAAAKSLRSLCFGPYAPSLNSSLFSLENDPISCGSGSKSRPIDNIFKFHKAISKDLEYLDNESVNLGDCDDTFFRQFCGRFHLLWGLYKAHSNAEDDIVFPALESKETLHNVSHSYTLDHKHEEELFEGISTALSKLTNLRRDLNSKKKCNYSNWTKSHTSDNNDTVRMNIELATKLQGMCRSIRVTLDQHIFREESELLPLFHTYFSVEEQDKIVGRIIGTTGAEVLQSMLPWVTSALTQEEQNRMMDTLKQATRNTMFSDWLNEWWEGPATSPLFLESVSHISGGSDSHGVCDQKNDSVFKPGWKEIFRMNENELESEIRKVARDSTIDPRRKDYLIQNLMTSRWIASQQMLPQATTGENSDARQLIASAPSFRDPKKQIFGCEHYKRNCKLLATCCGKLFTCSFCHDKVSDHPMDRKASTEMMCMRCLKVQPIGSVCTTPSCGGLSMAKYYCSICKLFDDEREVYHCPFCNLCRLGKGLGTDFFHCMTCNCCLAMKLVDHKCQERGLETNCPICCDFLFTSSESVRALPCGHFMHSACFQAYTCSHYICPICSKSLGDMTVYFGMLDALLALEVLPEEYRERCQDILCNDCSKKGKARFHWLYHKCRNCGSYNTKVIKVSSSSCSTLN 1241
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 76874994 76882867 + Hsped.01g11720.1 Hepe01g1172 560282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe01g1172 1241 ProSiteProfiles Zinc finger CTCHY-type profile. 1060 1123 IPR017921 -
Hepe01g1172 1241 Pfam Hemerythrin HHE cation binding domain 651 812 IPR012312 -
Hepe01g1172 1241 Pfam Hemerythrin HHE cation binding domain 311 443 IPR012312 -
Hepe01g1172 1241 Pfam Hemerythrin HHE cation binding domain 50 179 IPR012312 -
Hepe01g1172 1241 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1119 1168 IPR013083 -
Hepe01g1172 1241 Gene3D nmb1532 protein domain like 646 870 - -
Hepe01g1172 1241 Pfam Zinc-ribbon 1171 1228 IPR039512 -
Hepe01g1172 1241 CDD RING-H2_Pirh2-like 1123 1166 - -
Hepe01g1172 1241 SMART ring_2 1124 1165 IPR001841 -
Hepe01g1172 1241 Pfam CHY zinc finger 995 1063 IPR008913 GO:0008270(InterPro)
Hepe01g1172 1241 FunFam Zinc finger protein-related isoform 1 1119 1168 - -
Hepe01g1172 1241 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 686 1230 - -
Hepe01g1172 1241 FunFam Zinc finger protein BRUTUS 646 876 - -
Hepe01g1172 1241 SUPERFAMILY RING/U-box 1123 1170 - -
Hepe01g1172 1241 Pfam Ring finger domain 1123 1165 IPR001841 -
Hepe01g1172 1241 SUPERFAMILY CHY zinc finger-like 988 1051 IPR037274 GO:0008270(InterPro)
Hepe01g1172 1241 SUPERFAMILY Zinc hairpin stack 1061 1116 IPR037275 -
Hepe01g1172 1241 ProSiteProfiles Zinc finger RING-type profile. 1124 1166 IPR001841 -
Hepe01g1172 1241 Gene3D nmb1532 protein domain like 313 458 - -
Hepe01g1172 1241 Gene3D nmb1532 protein domain like 45 197 - -
Hepe01g1172 1241 CDD Hr-like 49 177 - -
Hepe01g1172 1241 Gene3D - 1195 1237 - -
Hepe01g1172 1241 CDD Hr-like 655 811 - -
Hepe01g1172 1241 CDD Hr-like 314 441 - -
Hepe01g1172 1241 ProSiteProfiles Zinc finger CHY-type profile. 988 1057 IPR008913 GO:0008270(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g1172 Hepe-Chr1:76874994 Hepe09g0145 Hepe-Chr9:1163876 1.10e-253 dispersed
Hepe03g0684 Hepe-Chr3:16380608 Hepe01g1172 Hepe-Chr1:76874994 3.49e-39 transposed
Hepe01g1172 Hepe-Chr1:76874994 Hepe09g0355 Hepe-Chr9:3107414 0.0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe01g1172 K16276 - csv:101217252 2172.9