Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe01g1189 ATGAGAATGAGCTGCAATGGGTGTCGAATTCTTCGCAAAGGATGTAGCGACGACTGTATAATTAGACCTTGTCTTCAATGGATTCCCTCGCCGGATTCTCAAGCCAACGCCACCATTTTTCTCGCCAAATTTTACGGCCGCGCCGGCCTCTTCAACCTCATCACCGCCGCCGCCCAACACCTCCGCCCTGCCATTTTCAAGTCGTTGTTGTACGAGGCGTGCGGGCGTATGGTGAATCCTGTCTACGGCTCCGTTGGACTGCTCTCCTCCGGCGATTGGGAAAGGTGTCAGGCCGCCGTCGACGCCGTGTTGACCGGATCCATGAACGTCGAACCCGACGTGCCACCGTCGAACACTAACCTCTCTCTCAAATGCTGCGACATTCGTCATGTCTCTAACGATACCAATTTGGCTGTTTCCGGCGAGCATCTCAAGGTCAAGGCTCGGAGCCGGTTCAAGAAGCCCGACCACCGGACCAAACCAAAACCTGGACAGGCTCATGAGTTGGGAAGTGGGTCTAATAATGTGGATGAGTTGGAGTTAGAGGCGAACCACCGGGTGGAAATGGTGGAGGGTTTGAATTTGATGATGAACCGGAGGAAACCGGGTCGAGTTTTGAGAAATGGAAGCCGGTTTGAGAAGGAGGATGTTGAGCTGGAACTTACTCTTAATTCGGCTCAGTTAGGGAAGAAAAATTAG 699 52.93 MRMSCNGCRILRKGCSDDCIIRPCLQWIPSPDSQANATIFLAKFYGRAGLFNLITAAAQHLRPAIFKSLLYEACGRMVNPVYGSVGLLSSGDWERCQAAVDAVLTGSMNVEPDVPPSNTNLSLKCCDIRHVSNDTNLAVSGEHLKVKARSRFKKPDHRTKPKPGQAHELGSGSNNVDELELEANHRVEMVEGLNLMMNRRKPGRVLRNGSRFEKEDVELELTLNSAQLGKKN 232
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 77054070 77056137 + Hsped.01g11890.1 Hepe01g1189 560299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe01g1189 232 MobiDBLite consensus disorder prediction 148 175 - -
Hepe01g1189 232 Pfam Lateral organ boundaries (LOB) domain 4 103 IPR004883 -
Hepe01g1189 232 ProSiteProfiles LOB domain profile. 3 109 IPR004883 -
Hepe01g1189 232 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 223 - GO:0010468(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g1189 Hepe-Chr1:77054070 Hepe02g0980 Hepe-Chr2:11929986 5.55e-67 dispersed
Hepe01g1189 Hepe-Chr1:77054070 Hepe09g0340 Hepe-Chr9:2984055 5.97e-62 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54809 PF03195 LOB 3.60E-23 No_clan Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe01g1189 - - - 0.0