Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe01g1200 ATGAAGGAGAATAAGAAGTCGCGGGGATGCGCAACTCATCACCGCTTTTGTACATTAAAAAATGACTTGTATGGCCTTGCGGAGATTCTGATGTCCAGATCTCTTCTTCGTCCTCTTCTTCTGCCTTATATAAAAGCACGGAATTCTGATCCAATCCTTCTTGCTCTTCTCTTCTTTACTTGCGCTTTCGGTTACCGTCTTTGTTCGGAGGCTTTGCTCGCTCTAGGGTATTGGTATAATTCTCTCGATTCCGGCGTCGGAGCTGCTGCTGCTGCTTTGGTCTTGCATCTTCGCGAAGGCAGCGATCAAGTTCCGAAGATGAAGATTTTCGTCAAGACTCTCAAAGGCTCGCACTTCGAAATCGAAGTTCAGTCTCAAGATACGGTTGCTGATGTGAAGAAAAACATAGAAACTGTTCAGGGCGCTGATGTTTACCCCGCTGCACAACAGATGCTTATCCATCAAGGAAAAGTCCTTAAAGACGGCACAACACTGGATGAAAATAAAGTTGCAGAAAATAGTTTTATTGTAATAATGTTAACAAAGAATAAAAGTTCATCGGGTGGGACATCTTCTTCTACCACACAAGCTGCACCAGTGTCGAAGGCACCACAGAGCACTGCCCCTGCCCCTGCTGCCACTCCAGTCTCAACATCTGAAGTTCCTCTACCAACTTCAGCACCGCCTGCTACTATTACCGACTCTTCTCCTCCTGCTCCGGCTTCGGCTCCAGCTCCAGCTCCAGTTCCGGCTCTTGCTCCTGCAACCACTGTTTTGCCAGAAACTGATGTTTACAGCCAAGCAGCTTCTAACCTGGTTGCCGGTAGTAACTTGGAGGAGACTATCCAACAGATTCTTCTCATGGGCGGAGGGACTTGGGACAGGGACACTGTTGTTCGAGCTCTTCGTGCTGCTTTCAATAATCCAGAAAGGGCTGTTGATTATCTTTATTCTGGCATACCTGAACAAGTCGAAGCTCCACCTACTGCTCAAGTTGTTCCGTCTACCGTGCAAGCGACCAACCCTTCTGCTCAACCTGCACAGCCAGCGTCTGTACCACCAGCTGGTCCAAATGCTAATCCATTAGATCTCTTTCCTCAGGGTGTGCCTAATTTAGCTTCCGGAGCTGCTGGTTCCGGCAGTCTCGATTTTCTAAGAAATAGTCCTCAGTTCCAAGCTTTGCGAGCAATGGTGCGAGCTAACCCTCAGATACTCCAGCCTATGCTTCAAGAGTTGGGTAAACAAAATCCTCAGCTGATTAGACTTATTCAAGATCATCAACCCGACTTTCTCCGCTTGATTAATGAGCCCCTTGAAGGAGAAGGGAATATACTTGGCCAGCTTGCTGAGGCTATGCCGCAGGCTATAACTGTAACCCCAGAAGAGCGTGAAGCGATTCAACGGCTTGAGGATTTGGGATTCGACAGAGCTCTAGTAGTGGAGGTTTTCTTCGCCTGCAACAAGAACGAGGAAATGGCTGCCAACTACCTCTTAGATCATATTCACGAATTTGAGGGAAGAAACGACTACAACTAA 1536 47.59 MKENKKSRGCATHHRFCTLKNDLYGLAEILMSRSLLRPLLLPYIKARNSDPILLALLFFTCAFGYRLCSEALLALGYWYNSLDSGVGAAAAALVLHLREGSDQVPKMKIFVKTLKGSHFEIEVQSQDTVADVKKNIETVQGADVYPAAQQMLIHQGKVLKDGTTLDENKVAENSFIVIMLTKNKSSSGGTSSSTTQAAPVSKAPQSTAPAPAATPVSTSEVPLPTSAPPATITDSSPPAPASAPAPAPVPALAPATTVLPETDVYSQAASNLVAGSNLEETIQQILLMGGGTWDRDTVVRALRAAFNNPERAVDYLYSGIPEQVEAPPTAQVVPSTVQATNPSAQPAQPASVPPAGPNANPLDLFPQGVPNLASGAAGSGSLDFLRNSPQFQALRAMVRANPQILQPMLQELGKQNPQLIRLIQDHQPDFLRLINEPLEGEGNILGQLAEAMPQAITVTPEEREAIQRLEDLGFDRALVVEVFFACNKNEEMAANYLLDHIHEFEGRNDYN 511
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 77191247 77203153 + Hsped.01g12000.1 Hepe01g1200 560310

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe01g1200 511 SMART ubq_7 107 181 IPR000626 GO:0005515(InterPro)
Hepe01g1200 511 FunFam UV excision repair protein RAD23 homolog 271 321 - -
Hepe01g1200 511 PANTHER UV EXCISION REPAIR PROTEIN RAD23 107 498 - GO:0005654(PANTHER)|GO:0005829(PANTHER)|GO:0031593(PANTHER)|GO:0043130(PANTHER)|GO:0043161(PANTHER)|GO:0070628(PANTHER)
Hepe01g1200 511 MobiDBLite consensus disorder prediction 337 358 - -
Hepe01g1200 511 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 459 500 IPR015940 -
Hepe01g1200 511 Pfam Ubiquitin family 109 182 IPR000626 GO:0005515(InterPro)
Hepe01g1200 511 PRINTS DNA repair protein Rad23 signature 408 430 IPR004806 GO:0006289(InterPro)
Hepe01g1200 511 PRINTS DNA repair protein Rad23 signature 488 503 IPR004806 GO:0006289(InterPro)
Hepe01g1200 511 PRINTS DNA repair protein Rad23 signature 473 487 IPR004806 GO:0006289(InterPro)
Hepe01g1200 511 PRINTS DNA repair protein Rad23 signature 456 472 IPR004806 GO:0006289(InterPro)
Hepe01g1200 511 FunFam UV excision repair protein RAD23 homolog 453 501 - -
Hepe01g1200 511 Gene3D - 372 437 IPR036353 GO:0003684(InterPro)|GO:0006289(InterPro)|GO:0043161(InterPro)
Hepe01g1200 511 SUPERFAMILY UBA-like 275 323 IPR009060 GO:0005515(InterPro)
Hepe01g1200 511 SUPERFAMILY UBA-like 442 504 IPR009060 GO:0005515(InterPro)
Hepe01g1200 511 CDD UBA1_Rad23_plant 272 321 - -
Hepe01g1200 511 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 276 319 IPR015940 -
Hepe01g1200 511 SMART uba_6 278 318 IPR015940 -
Hepe01g1200 511 SMART uba_6 462 499 IPR015940 -
Hepe01g1200 511 Gene3D - 104 186 - -
Hepe01g1200 511 FunFam UV excision repair protein RAD23 B 373 438 - -
Hepe01g1200 511 SMART CBM 380 423 IPR006636 -
Hepe01g1200 511 MobiDBLite consensus disorder prediction 184 230 - -
Hepe01g1200 511 Pfam UBA/TS-N domain 279 316 IPR015940 -
Hepe01g1200 511 Pfam UBA/TS-N domain 462 497 IPR015940 -
Hepe01g1200 511 SUPERFAMILY Ubiquitin-like 107 185 IPR029071 -
Hepe01g1200 511 SUPERFAMILY XPC-binding domain 378 443 IPR036353 GO:0003684(InterPro)|GO:0006289(InterPro)|GO:0043161(InterPro)
Hepe01g1200 511 FunFam UV excision repair protein RAD23 107 186 - -
Hepe01g1200 511 Gene3D - 454 501 - -
Hepe01g1200 511 NCBIfam UV excision repair protein Rad23 107 505 IPR004806 GO:0006289(InterPro)
Hepe01g1200 511 CDD Ubl_Rad23 107 180 - -
Hepe01g1200 511 MobiDBLite consensus disorder prediction 184 248 - -
Hepe01g1200 511 ProSiteProfiles Ubiquitin domain profile. 107 185 IPR000626 GO:0005515(InterPro)
Hepe01g1200 511 MobiDBLite consensus disorder prediction 231 248 - -
Hepe01g1200 511 Pfam XPC-binding domain 382 437 IPR015360 GO:0003684(InterPro)|GO:0006289(InterPro)|GO:0043161(InterPro)
Hepe01g1200 511 Gene3D - 271 321 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe01g1200 K10839 - - csv:101220491 594.734
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g1200 Hepe-Chr1:77191247 Hepe02g1285 Hepe-Chr2:16067841 9.01e-119 dispersed
Hepe01g1200 Hepe-Chr1:77191247 Hepe07g1268 Hepe-Chr7:37054331 2.18e-09 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g298 . . . . . Bpe10g00939 Bma14g01707 Bma15g00085 . Cmo18g01038 . Cma18g01028 . Car18g00948 Sed06g1882 Cpe09g00295 . Bhi07g01334 Tan04g0868 Cmetu10g1073 Lac13g0486 Hepe01g1200 . . Cla05g02307 . Cec05g2503 Cco05g2545 . . Cre05g2454 Cone13ag0836 Cone19ag0843 . . Lsi04g00262 Csa05g02604 Chy10g01139 Cme10g00268 . Blo11g00839 Bda07g01534 . Bpe11g01698 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004990 1 1 1 2 2 0 2 1 1 1 1 0 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 3 2 2 41