Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe01g1204 ATGCAAGCATCTATACTAAGCATTTACTCTATAATGGTTATGCAGGAGTGTCATTTGGTTGATGAATTATCTAATATTGAGACTAATTTAACTGTGAAAGAGGGAGCAGGAAACAGTCCGAGAGATCGTAAGACGTCGAAAGAGAATAATAAGTTCTATAATTTAGATAAGGACGAAGATGGCTCTTATCTAAAAAGAGTCTCAGACAAGGAAAACACGATGCTCTACCATACTGACAGTGGCTGTAAGCATGACAATGATGTTGGCTTTTCAAGAAGTGAAGTGACTGGAGCTAAATACAATGATCTTGAACGTTGTCTAGAGGGTCATAGCAAAGGAGATTTTGATCAAGAATCTCTTGATTTGGATGAGAGGAGGCACAAACAAATGTTATCTCCTTCCAAAGGTGGTAGTAAGAAAATAAGCGACACTGATAATGGAAAGGTGGCAACAGATGGCAGCACCTTCGGGAAATTGAAAAGGCCACAGTTGGAAGACAAGTCCCAGGATTTTACGCCATCAACATCTCACGATCGATTCATCGATGCATCAGATTGTAGGAGTAGATCGAGGTCAAATTGTCACTCTAGGGGGCAATCCCAGTCTCGTGAAACAGTAGAAGAGGAGGCGGAGTCAAAGAGGAGTCATCATCATGGTTGGGATCGCTCAGTATTTGATGAATATGCTAGGGGAGAGGGAAGGAATCAAAGCAGGGATACGAAGGAAAGAGGGAGAAGTAAGATGGAGGTGGATAGGGACTGGTCAAAGGAAAATGAATGGGAAAAAAACAAAGATAAAGACAGGGGGATAGATAAGCACAAGTATGATGAGAGAGAGAGAGGAAGCAGTAGGGATAGAAGAAAAGAGGTAGAACGAAATAGGAGCAGGGAAAGAGAGTTCGATAAGGATAGGAGGAGGGAAAGGGATGTAGAAAGAGACAGGAGAGTGAAGGAAAGGGATTGGAGTAGGGAAAAAGAGGTGGAAAGAGATAGAAGAGTGGAGAAGGAAAGAGAGGTAGAAAGGGAAAGAAGAACGGAGAAGGAAAGAGGTTGGAGCAGGGAAAGAGAGGTGGATTGGGATAGAAGAGCAGCGAAGGAAAGATGTAGGAGCACAGATAGAGAGGGTAATAGGGATAGAAGAAGAGAAAGGGAAAAGGATAGGAGCAAGGACAAAGAAGTGGATTGGGATGGGAGAAGGGATAGGGACAGAGACCGGAATGATGATAATGCTGAATACAATGATAGAAATAGAGACCGGGAAAGGGTGAGAGAGATGCAAAAGGACCGGTTTAGGGATAAAGAATCAGATAGGGAAAGACGAGATGATAGAAATAAGAATAAAGCCAGTGATATTTTAAGTAGTAGGGATAAGTATGGGAATCTTGAACATGGCTATGTTAAAGTTTCTAGCAAGCAGTCTAGACATTATGATAATGAATCTGGTCAGGGTGGGGAAAGAATTAAGGCTATTGAAAAGCATGGTAGTTTTAAGAGAAATACTCTTGAAGGAGGTGGAAGAAAAATAATGAGTGATCACGATGAGGAGGAAGAGGATGAGGACAACATGTCATTTCAATTAGCTGACCAAGAAGAGGAGGATCTTAACAGAATCAAGGAGGAGAGTAGAAGACGGAGACAAGCAATCTTAGAAAAATACAAATGTCAGCGGTTAGAGAAACAAGTAGAGCCTTCTTTGAACGATTCTGAGAAAGATAAGGATTCTGCAAATGATTCTTCTCAATCAGAAGCTGCTGCTCATGCTATTCCGGAATTGGTTGATGGAGTGGTGGATGACAGTGTTGCTGACTCATCTTTTGTTGTGGAGAAATCACCACAACAAAATGGAGTAGCTGCCTCTGATAAAACTATTGGTACCAAAGGACTTGGAGAGGGTACTCCTAAGGCGGAGGAGGGGTCAGATGGATTATTCTGTGATGATATTTTTGGAGAAACGCCTGCTGCAGTTCGTAAAATGGGCAAAGGAGATGGTTTTCGGATAGAGAGGAGTGGTCTTCATGACAATTGGGATGATGCGGATGGATATTATAATTATCGATTTGGTGAAGTTCTTGATGGTCGGTATGAAGTTGCCGCTGCTCATGGCAAAGGTGTCTTTTCAACTGTAGTCCGTGCAAAGGATCTCAAAGCTGGTCATGGAGAACCAGAAGAAGTGGCAATCAAAATTTTGCGTAGTAATGAAACAATGTACAAGGCTGGTCTGGAGGAGTTGGTCATATTGAAAAAGCTAGTAGGTGCAGATCCAGATGATAAGCGTCACTGTGTTCGTTTTCTTTCAAGTTTCAAATATAGGAATCATCTTTGTTTAGTTTTTGAATCTCTTCATATGAATCTCCGTGAGGTCTTGAAGAAATTTGGGCGCAATATTGGCCTTAAGCTAACTGCTGTGAGGGCATATGCTAAGCAGCTTTTTATTGCCCTGAAGCATTTGAGAAATTGTGGTGTTCTACATTGTGACATAAAGCCAGATAATATGCTGGTTAACGAGGGAAAAAATGTGCTGAAGCTTTGTGATTTCGGTAATGCCATGTTTGCTGGTAAAAACGAAATTACCCCATACCTTGTTAGCCGGTTTTATCGTGCCCCTGAAATAATTTTAGGGCTGCCGTATGACCATCCAATGGATATTTGGTCTGTGGGTTGCTGTTTGTACGAGATCTCTACAGGAAAAGTTCTTTTTCCAGGTCCTTCTAATAATGACATGCTGCGCCTACACATGGAATTAAAGGGCCCTTTTCCAAAGAAGATGCTTCGGAAGGGAGGATTTACTGACCAACATTTTGACCAGGACCTGAACTTCCATGCTTCGGAGGAGGATCCTGTAACCAAAAAGACCATAAAGCGAATAATAGTCAATATAAAGCCTAAAGATATTGGATCAATTATTAGGGGATCTCCTGGTGAAGATCCAAAGATGTTAGCCAATTTTAAGGATCTTCTAGACAAAATTTTTGTGTTGGATCCAGAAAAAAGGATGACAGTGTCACAAGCATTGAATCATCCATTCATCACTGGCAAGTGA 3039 41.56 MQASILSIYSIMVMQECHLVDELSNIETNLTVKEGAGNSPRDRKTSKENNKFYNLDKDEDGSYLKRVSDKENTMLYHTDSGCKHDNDVGFSRSEVTGAKYNDLERCLEGHSKGDFDQESLDLDERRHKQMLSPSKGGSKKISDTDNGKVATDGSTFGKLKRPQLEDKSQDFTPSTSHDRFIDASDCRSRSRSNCHSRGQSQSRETVEEEAESKRSHHHGWDRSVFDEYARGEGRNQSRDTKERGRSKMEVDRDWSKENEWEKNKDKDRGIDKHKYDERERGSSRDRRKEVERNRSREREFDKDRRRERDVERDRRVKERDWSREKEVERDRRVEKEREVERERRTEKERGWSREREVDWDRRAAKERCRSTDREGNRDRRREREKDRSKDKEVDWDGRRDRDRDRNDDNAEYNDRNRDRERVREMQKDRFRDKESDRERRDDRNKNKASDILSSRDKYGNLEHGYVKVSSKQSRHYDNESGQGGERIKAIEKHGSFKRNTLEGGGRKIMSDHDEEEEDEDNMSFQLADQEEEDLNRIKEESRRRRQAILEKYKCQRLEKQVEPSLNDSEKDKDSANDSSQSEAAAHAIPELVDGVVDDSVADSSFVVEKSPQQNGVAASDKTIGTKGLGEGTPKAEEGSDGLFCDDIFGETPAAVRKMGKGDGFRIERSGLHDNWDDADGYYNYRFGEVLDGRYEVAAAHGKGVFSTVVRAKDLKAGHGEPEEVAIKILRSNETMYKAGLEELVILKKLVGADPDDKRHCVRFLSSFKYRNHLCLVFESLHMNLREVLKKFGRNIGLKLTAVRAYAKQLFIALKHLRNCGVLHCDIKPDNMLVNEGKNVLKLCDFGNAMFAGKNEITPYLVSRFYRAPEIILGLPYDHPMDIWSVGCCLYEISTGKVLFPGPSNNDMLRLHMELKGPFPKKMLRKGGFTDQHFDQDLNFHASEEDPVTKKTIKRIIVNIKPKDIGSIIRGSPGEDPKMLANFKDLLDKIFVLDPEKRMTVSQALNHPFITGK 1012
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 77232656 77242737 + Hsped.01g12040.1 Hepe01g1204 560314

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe01g1204 1012 FunFam Serine/threonine-protein kinase PRP4 homolog 754 1010 - -
Hepe01g1204 1012 MobiDBLite consensus disorder prediction 129 539 - -
Hepe01g1204 1012 MobiDBLite consensus disorder prediction 201 512 - -
Hepe01g1204 1012 Gene3D Phosphorylase Kinase; domain 1 664 753 - -
Hepe01g1204 1012 MobiDBLite consensus disorder prediction 37 54 - -
Hepe01g1204 1012 SUPERFAMILY Protein kinase-like (PK-like) 681 1011 IPR011009 -
Hepe01g1204 1012 Coils Coil 512 547 - -
Hepe01g1204 1012 MobiDBLite consensus disorder prediction 559 590 - -
Hepe01g1204 1012 MobiDBLite consensus disorder prediction 559 577 - -
Hepe01g1204 1012 MobiDBLite consensus disorder prediction 513 527 - -
Hepe01g1204 1012 ProSitePatterns Serine/Threonine protein kinases active-site signature. 821 833 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Hepe01g1204 1012 ProSiteProfiles Protein kinase domain profile. 694 1009 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe01g1204 1012 Pfam Protein kinase domain 695 1009 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe01g1204 1012 MobiDBLite consensus disorder prediction 611 637 - -
Hepe01g1204 1012 CDD STKc_PRP4 693 1009 IPR044092 GO:0004674(InterPro)|GO:0006468(InterPro)|GO:0045292(InterPro)
Hepe01g1204 1012 MobiDBLite consensus disorder prediction 159 173 - -
Hepe01g1204 1012 SMART serkin_6 694 1009 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe01g1204 1012 Gene3D Transferase(Phosphotransferase) domain 1 754 1010 - -
Hepe01g1204 1012 Coils Coil 325 345 - -
Hepe01g1204 1012 FunFam serine/threonine-protein kinase PRP4 homolog 665 753 - -
Hepe01g1204 1012 MobiDBLite consensus disorder prediction 33 54 - -
Hepe01g1204 1012 PANTHER DUAL SPECIFICITY PROTEIN KINASE 369 1011 IPR050494 GO:0004674(PANTHER)|GO:0018105(PANTHER)|GO:0018107(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe01g1204 K08827 - - csv:101220260 1484.54
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g1204 Hepe-Chr1:77232656 Hepe07g2563 Hepe-Chr7:70065391 7.63e-45 dispersed
Hepe01g1204 Hepe-Chr1:77232656 Hepe10g1145 Hepe-Chr10:45365074 2.63e-28 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g291 . . Bda01g01858 . . . Bma14g01704 . . Cmo18g01042 . Cma18g01030 . Car18g00952 Sed14g1516 Cpe09g00291 . Bhi07g01339 Tan04g0874 Cmetu10g1483 Lac13g0482 Hepe01g1204 . . Cla05g02311 Cam05g2484 . . Clacu05g2479 Cmu05g2340 . . . Cone6ag0456 Cone9ag0467 Lsi04g00266 Csa05g02600 Chy10g01135 Cme10g00272 . Blo11g00836 . . Bpe11g01696 . . . . . . . Cma15g01400 . Car15g01262 Cpe13g00051 . . . . . . . . Cla01g00533 Cam01g0553 Cec01g0545 Cco01g0569 Clacu01g0551 Cmu01g0524 Cre09g1986 Lsi09g00576 . Chy09g00937 Cme09g01465
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003313 0 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 2 1 1 1 10 7 1 50
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
72459 PF00069 Pkinase 3.70E-46 CL0016 Hepe PK