Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe01g1219 ATGGATTTCGTTGATAATGTTCTTGATATTCGTGTTGGAATTGATTTGAGGCACTATGCTGATGCTTTGGATCAAGAACGCAGCAAAATTCAGGTCTTTCAGCGCGAACTTCCCCTCTGTTTGGAGCTTGTTACCAGAGCGATTGATTCTTGCCGGCAGCAAATATCTGGGGTGTCGACGGAGAGCTCTGAGCATACTTCAAGCGATGGCCCTGTTTTGGAGGAGTTTATTCCGATTAAAAACGTTTTGGCCAAATCCCATTTTGAAATTGAAGAAGATGAACAATCAATACCAGAGAAAAATGAAGTGGGTCGATTGGATTGGCTTAAATCAGCTCAGCTTTGGAATCAAACTCCGGATCCAACCGTTACAGAGGATGTTGGTATGAAAACGACGTCGTCGGTTGTTGAGGTGAATAAGAATGGCGGTGGCGGTGCTTTTCAGCCGTTTCAGAAGGAGAAAACTGTATTGAAAACAGAGGCGGCGGCGGCAGTGATTGGTAAAACGATTTGTTCTTCTCCGGTGCCGGAGACGACGACGAGTTCGACGGCGGAAACCGCATCCAAAAGCAGCGGCGGAACTAGTAAATGTGAAGATAAGGAATCTCAAGCTCAAAGAAAACAGAGACGGTGCTGGTCGTCGGAGTTACACCGGCGATTCGTTCATTCCCTTCAACAACTCGGCGGCCCTCATGTTGCTACACCGAAACAAATCAGAGATTTAATGAAGGTTGATGGGCTCACTAACGATGAAGTCAAAAGCCATTTACAGAAATACCGATTACACGCAAGAAGGCCAACAAATTCTGCAATGCAAGACAGCGGCAGCTCATCGGCGCCGCAGCAATTCGTGGTAGTCGGAAGCTTATGGGTGCCACCACCGCCGCCGCCGAAATACACGGTGGCGACGACGGGGAAAGTAAGAAATGGGGTTTATGCTCCGGTGGCGACGATGGTGCGACGGCAGAAGACGGTAGAGGAAGGGAAAGGGAGCCACAGCGGCGGAGTGGTTCATTCGAATTCGCCGGCGACGTCTTCCTCCACTCACACAACGACAACCTCGCCGTCGGCGGCGGCGGCGTAG 1083 50.05 MDFVDNVLDIRVGIDLRHYADALDQERSKIQVFQRELPLCLELVTRAIDSCRQQISGVSTESSEHTSSDGPVLEEFIPIKNVLAKSHFEIEEDEQSIPEKNEVGRLDWLKSAQLWNQTPDPTVTEDVGMKTTSSVVEVNKNGGGGAFQPFQKEKTVLKTEAAAAVIGKTICSSPVPETTTSSTAETASKSSGGTSKCEDKESQAQRKQRRCWSSELHRRFVHSLQQLGGPHVATPKQIRDLMKVDGLTNDEVKSHLQKYRLHARRPTNSAMQDSGSSSAPQQFVVVGSLWVPPPPPPKYTVATTGKVRNGVYAPVATMVRRQKTVEEGKGSHSGGVVHSNSPATSSSTHTTTTSPSAAAA 360
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 77366530 77368415 - Hsped.01g12190.1 Hepe01g1219 560329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe01g1219 360 MobiDBLite consensus disorder prediction 322 360 - -
Hepe01g1219 360 FunFam Myb family transcription factor 206 264 - -
Hepe01g1219 360 Gene3D - 206 263 - -
Hepe01g1219 360 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 204 264 IPR017930 -
Hepe01g1219 360 MobiDBLite consensus disorder prediction 172 193 - -
Hepe01g1219 360 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 16 327 IPR044787 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe01g1219 360 MobiDBLite consensus disorder prediction 194 212 - -
Hepe01g1219 360 MobiDBLite consensus disorder prediction 172 212 - -
Hepe01g1219 360 NCBIfam myb-like DNA-binding domain, SHAQKYF class 207 262 IPR006447 GO:0003677(InterPro)
Hepe01g1219 360 SUPERFAMILY Homeodomain-like 205 264 IPR009057 -
Hepe01g1219 360 MobiDBLite consensus disorder prediction 334 360 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g1219 Hepe-Chr1:77366530 Hepe08g2569 Hepe-Chr8:67330577 3.54e-40 dispersed
Hepe01g1219 Hepe-Chr1:77366530 Hepe02g2703 Hepe-Chr2:75013252 3.71e-69 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54812 None None None None Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe01g1219 - - - 0.0