Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe01g1219 ATGGATTTCGTTGATAATGTTCTTGATATTCGTGTTGGAATTGATTTGAGGCACTATGCTGATGCTTTGGATCAAGAACGCAGCAAAATTCAGGTCTTTCAGCGCGAACTTCCCCTCTGTTTGGAGCTTGTTACCAGAGCGATTGATTCTTGCCGGCAGCAAATATCTGGGGTGTCGACGGAGAGCTCTGAGCATACTTCAAGCGATGGCCCTGTTTTGGAGGAGTTTATTCCGATTAAAAACGTTTTGGCCAAATCCCATTTTGAAATTGAAGAAGATGAACAATCAATACCAGAGAAAAATGAAGTGGGTCGATTGGATTGGCTTAAATCAGCTCAGCTTTGGAATCAAACTCCGGATCCAACCGTTACAGAGGATGTTGGTATGAAAACGACGTCGTCGGTTGTTGAGGTGAATAAGAATGGCGGTGGCGGTGCTTTTCAGCCGTTTCAGAAGGAGAAAACTGTATTGAAAACAGAGGCGGCGGCGGCAGTGATTGGTAAAACGATTTGTTCTTCTCCGGTGCCGGAGACGACGACGAGTTCGACGGCGGAAACCGCATCCAAAAGCAGCGGCGGAACTAGTAAATGTGAAGATAAGGAATCTCAAGCTCAAAGAAAACAGAGACGGTGCTGGTCGTCGGAGTTACACCGGCGATTCGTTCATTCCCTTCAACAACTCGGCGGCCCTCATGTTGCTACACCGAAACAAATCAGAGATTTAATGAAGGTTGATGGGCTCACTAACGATGAAGTCAAAAGCCATTTACAGAAATACCGATTACACGCAAGAAGGCCAACAAATTCTGCAATGCAAGACAGCGGCAGCTCATCGGCGCCGCAGCAATTCGTGGTAGTCGGAAGCTTATGGGTGCCACCACCGCCGCCGCCGAAATACACGGTGGCGACGACGGGGAAAGTAAGAAATGGGGTTTATGCTCCGGTGGCGACGATGGTGCGACGGCAGAAGACGGTAGAGGAAGGGAAAGGGAGCCACAGCGGCGGAGTGGTTCATTCGAATTCGCCGGCGACGTCTTCCTCCACTCACACAACGACAACCTCGCCGTCGGCGGCGGCGGCGTAG 1083 50.05 MDFVDNVLDIRVGIDLRHYADALDQERSKIQVFQRELPLCLELVTRAIDSCRQQISGVSTESSEHTSSDGPVLEEFIPIKNVLAKSHFEIEEDEQSIPEKNEVGRLDWLKSAQLWNQTPDPTVTEDVGMKTTSSVVEVNKNGGGGAFQPFQKEKTVLKTEAAAAVIGKTICSSPVPETTTSSTAETASKSSGGTSKCEDKESQAQRKQRRCWSSELHRRFVHSLQQLGGPHVATPKQIRDLMKVDGLTNDEVKSHLQKYRLHARRPTNSAMQDSGSSSAPQQFVVVGSLWVPPPPPPKYTVATTGKVRNGVYAPVATMVRRQKTVEEGKGSHSGGVVHSNSPATSSSTHTTTTSPSAAAA 360
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 77366530 77368415 - Hsped.01g12190.1 Hepe01g1219 560329

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe01g1219 360 MobiDBLite consensus disorder prediction 322 360 - -
Hepe01g1219 360 FunFam Myb family transcription factor 206 264 - -
Hepe01g1219 360 Gene3D - 206 263 - -
Hepe01g1219 360 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 204 264 IPR017930 -
Hepe01g1219 360 MobiDBLite consensus disorder prediction 172 193 - -
Hepe01g1219 360 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 16 327 IPR044787 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe01g1219 360 MobiDBLite consensus disorder prediction 194 212 - -
Hepe01g1219 360 MobiDBLite consensus disorder prediction 172 212 - -
Hepe01g1219 360 NCBIfam myb-like DNA-binding domain, SHAQKYF class 207 262 IPR006447 GO:0003677(InterPro)
Hepe01g1219 360 SUPERFAMILY Homeodomain-like 205 264 IPR009057 -
Hepe01g1219 360 MobiDBLite consensus disorder prediction 334 360 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe01g1219 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g1219 Hepe-Chr1:77366530 Hepe08g2569 Hepe-Chr8:67330577 3.54e-40 dispersed
Hepe01g1219 Hepe-Chr1:77366530 Hepe02g2703 Hepe-Chr2:75013252 3.71e-69 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g270 Blo01g00489 Blo16g01054 Bda01g02090 . Bpe13g01332 . Bma14g01699 . . Cmo18g01059 . Cma18g01041 . Car18g00967 Sed06g1866 Cpe09g00276 . Bhi07g01367 Tan04g0896 Cmetu10g0277 Lac13g0461 Hepe01g1219 . . Cla05g02327 Cam05g2500 Cec05g2524 Cco05g2566 Clacu05g2494 Cmu05g2357 Cre05g2473 Cone13ag0852 Cone19ag0853 Cone6ag0464 Cone9ag0476 Lsi04g00286 Csa05g02583 Chy10g01118 Cme10g00288 . Blo11g00832 Bda07g01528 . . Bpe02g02281 . Bma06g00768 . . . . . . Car15g00854 Cpe13g00409 . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe05g1761 . 12 265 G2-like Transcription Factor Family AT3G24120 62.8 1.6e-77 286.6
Hepe02g0007 . 20 170 G2-like Transcription Factor Family AT3G24120 59.5 9.1e-41 164.5
Hepe08g0654 . 22 167 G2-like Transcription Factor Family AT3G24120 60.8 4.5e-40 162.2
Hepe04g1685 . 31 149 G2-like Transcription Factor Family AT3G24120 67.2 2.7e-37 152.9
Hepe02g1065 . 104 424 G2-like Transcription Factor Family AT5G16560 50.2 8.5e-50 194.9
Hepe06g1799 . 192 394 G2-like Transcription Factor Family AT5G16560 51.2 1.5e-38 157.5
Hepe01g1720 . 10 177 G2-like Transcription Factor Family AT5G42630 60.4 4.3e-43 171.8
Hepe10g0690 . 17 169 G2-like Transcription Factor Family AT5G42630 60.6 3.6e-42 168.7
Hepe02g2703 . 1 262 G2-like Transcription Factor Family AT1G25550 51.5 1.1e-53 207.2
Hepe01g1219 . 19 257 G2-like Transcription Factor Family AT1G25550 50.6 6.9e-51 198.0
Hepe10g1262 . 1 304 G2-like Transcription Factor Family AT3G46640 50.3 2.0e-62 236.5
Hepe04g0521 . 1 300 G2-like Transcription Factor Family AT5G05090 55.5 4.3e-74 275.0
Hepe05g0644 . 1 277 G2-like Transcription Factor Family AT5G05090 51.7 3.1e-64 242.3
Hepe05g1761 . 12 313 G2-like Transcription Factor Family AT4G13640 57.5 1.3e-63 240.4
Hepe06g1901 . 149 404 G2-like Transcription Factor Family AT3G04450 52.5 3.3e-54 209.5
Hepe05g1761 . 12 265 G2-like Transcription Factor Family AT3G24120 62.8 1.6e-77 286.6
Hepe02g0007 . 20 170 G2-like Transcription Factor Family AT3G24120 59.5 9.1e-41 164.5
Hepe08g0654 . 22 167 G2-like Transcription Factor Family AT3G24120 60.8 4.5e-40 162.2
Hepe04g1685 . 31 149 G2-like Transcription Factor Family AT3G24120 67.2 2.7e-37 152.9
Hepe02g0007 . 1 333 G2-like Transcription Factor Family AT1G79430 56.3 7.2e-85 311.2
Hepe08g0654 . 1 361 G2-like Transcription Factor Family AT1G79430 54.6 9.1e-80 294.3
Hepe05g1761 . 37 201 G2-like Transcription Factor Family AT1G79430 61.2 3.5e-39 159.5
Hepe04g1684 . 84 316 G2-like Transcription Factor Family AT2G01060 61.5 8.0e-56 214.2
Hepe04g0521 . 1 300 G2-like Transcription Factor Family AT3G10760 62.3 2.0e-92 336.3
Hepe05g0644 . 1 277 G2-like Transcription Factor Family AT3G10760 52.6 1.9e-71 266.5
Hepe04g0521 . 1 192 G2-like Transcription Factor Family AT2G40970 63.8 4.6e-62 235.0
Hepe05g0644 . 1 176 G2-like Transcription Factor Family AT2G40970 61.3 3.0e-53 205.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013799 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 2 1 0 25
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54812 None None None None Hepe TF