Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe01g1220 ATGGATGGTATTTGCATTGACCAAACCACTCCCACTGAATCTCCGGTGAAATCTCTCCCGCCGGAGACCAGTCTCTGCCGTGTTGGGAGTGGCAACACCAGTATCGTTCTCGACTCCGACTCCTCCAGCGGGGTCGAGGCGGAGTCCCGAAAACTCCCCTCGTCCCGTTACAAAGGAGTCGTCCCCCAGCCCAACGGCCGCTGGGGGGCTCAGATTTACGAGAAGCACCAGAGAGTATGGCTGGGGACGTTCAATGAAGAGGACGAAGCTGCACGTGCCTACGACGTCGCCGCCCAACGCTTCCGTGGACGTGACGCCGTCACCAATTTCAAACCGTTATCTCACGGTGGAGGAGAAGACGACGTCGTATCCGCCTTCCTCAATTCCCATTCCAAAGCTGAGATCGTCGACATGCTACGTAAGCACACTTATCTCGACGAGCTCCACCAAAGCAAACGAAACGCCGGCTTATTCGGTTCGGACCGGAAACGAATCTGGATGGGTACCGGCCTATCCGATCCGGATACCGCGGCTCGCGAACTTCTATTTGAAAAAGCCGTGACTCCAAGCGATGTGGGGAAATTGAACCGTTTGGTCATCCCCAAACAACACGCCGAGAAAAACTTCCCGCTTCAAACCGGCTCGACCGCTTCGTCGAAAGGGCTTTTGTTGAACTTTGAAGACGGAGGAGGGAAAGTATGGCGGTTCCGGTACTCGTATTGGAATAGTAGCCAAAGCTACGTGCTGACCAAAGGGTGGAGCCGGTTCGTGAAGGAGAAGAATCTTAAAGCCGGTGACATTGTTAGCTTCTTGAAATCGACCGGACCAGACAAACAGTTTTACATCGAATGGAAGGCTAGAACCGGATCTAACGTGAACCCGGTTCAGACCGTGAGATTATTTGGAGTGGACATTATCAAAGTATTGCCAAATAGTGGGTGTAGTGAGAAAAGGAGGAGAGAATTGGAGTTTCTCGATTTAGAATTCACCAAAAAACAAAGGATAGTCGGAGCATTGTAA 1020 52.06 MDGICIDQTTPTESPVKSLPPETSLCRVGSGNTSIVLDSDSSSGVEAESRKLPSSRYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEDEAARAYDVAAQRFRGRDAVTNFKPLSHGGGEDDVVSAFLNSHSKAEIVDMLRKHTYLDELHQSKRNAGLFGSDRKRIWMGTGLSDPDTAARELLFEKAVTPSDVGKLNRLVIPKQHAEKNFPLQTGSTASSKGLLLNFEDGGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDIVSFLKSTGPDKQFYIEWKARTGSNVNPVQTVRLFGVDIIKVLPNSGCSEKRRRELEFLDLEFTKKQRIVGAL 339
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 77380913 77382241 - Hsped.01g12200.1 Hepe01g1220 560330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe01g1220 339 ProSiteProfiles B3 DNA-binding domain profile. 183 288 IPR003340 GO:0003677(InterPro)
Hepe01g1220 339 SMART rav1_2 56 117 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe01g1220 339 SMART B3_2 183 288 IPR003340 GO:0003677(InterPro)
Hepe01g1220 339 ProSiteProfiles AP2/ERF domain profile. 56 111 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe01g1220 339 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 55 305 IPR044800 GO:0003700(InterPro)
Hepe01g1220 339 Pfam AP2 domain 55 103 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe01g1220 339 MobiDBLite consensus disorder prediction 1 20 - -
Hepe01g1220 339 Gene3D AP2/ERF domain 55 112 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe01g1220 339 FunFam AP2 domain-containing protein RAP2.8 55 112 - -
Hepe01g1220 339 CDD AP2 55 110 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe01g1220 339 SUPERFAMILY DNA-binding domain 55 111 IPR016177 GO:0003677(InterPro)
Hepe01g1220 339 SUPERFAMILY DNA-binding pseudobarrel domain 181 282 IPR015300 -
Hepe01g1220 339 Gene3D - 172 297 IPR015300 -
Hepe01g1220 339 Pfam B3 DNA binding domain 183 272 IPR003340 GO:0003677(InterPro)
Hepe01g1220 339 CDD B3_DNA 182 270 IPR003340 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g1220 Hepe-Chr1:77380913 Hepe09g0587 Hepe-Chr9:5520619 4.32e-54 dispersed
Hepe03g0743 Hepe-Chr3:19841950 Hepe01g1220 Hepe-Chr1:77380913 1.39e-46 transposed
Hepe05g0407 Hepe-Chr5:5062818 Hepe01g1220 Hepe-Chr1:77380913 8.68e-42 transposed
Hepe06g1411 Hepe-Chr6:64472738 Hepe01g1220 Hepe-Chr1:77380913 4.15e-46 transposed
Hepe07g0751 Hepe-Chr7:9030726 Hepe01g1220 Hepe-Chr1:77380913 2.94e-45 transposed
Hepe01g1220 Hepe-Chr1:77380913 Hepe02g2727 Hepe-Chr2:75605957 6.64e-131 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54813 PF02362 B3 3.30E-27 CL0405 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe01g1220 K09287 - csv:101203784 593.964